Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1878 ATGAGCAACGAAGGAGAAGAACAAGCAAAGCCAACAACCACAAGAAGAAGAATCAACCTGGTAGCAGGTTCATACGAGCGATTCATATGGGGATTCAATCTCAATCCCAATCGTCAAACCCTAAAACCCATCTTCTCCTACCCTTCCCACCTCTCCGTCATTAAAACCCTCGCCGTCTGCGGCTCCGTCGTCGCCTCCGGCGGCACCGACGACACCATCCACCTCTACAATCTCTCCAACGCCTCCTCCCTTGGCTCCCTCCACGACCACTCCGCCACCGTCACTGCACTCGCCTTCCACTCCCTTCCCAATATCCCTCACCCTACTACACTCATCTCCGCCGACGCTGATGGCTCGGTCTGTATCTTCGATGCAGACAGCTTCGTCCACCTCAAGACGCTTCCTATCCACCGCAAGGCCGTCAATGACCTCGCCCTCCACCCCTCTGGCACGCTTGCTCTCACTGTTTCCCGGGATCGGTGTTTTGCCATGGTTAACCTTGTTCGCGGACGCAGGAGCTTCTGTTGCCGCCTCGATAACGAGGCTACTATCGTCAAATTCAACGCTGCTGGTGATGCCTTCTTCATGGCTGCTGATGAGACTGTCTCTGTTCACCAGGCTGAGGACGCGCGCTTGTTGTTCCAGTTGCAATGCCCGAAGCGGGTTCTATGTGCCGCGCCAGATAAGAATGGTCTTCTCTACACAGGCGGTGAGGACCGAAATATCACAGCATGGGACATAAAAAGTGGAAAAGTTGCATACAGCATAGAAGAAGCACACACTGCCCGTGTAAAAGGTATTGTTGTCCTTGGAGATTGTGATGGTGCTACGGAGGGTGATGACCCATATCTAGTGGCATCTGCATCATCTGATGGTACTATACGAGTCTGGGATGTTCGAATGGCTGCCACAGAGAAGCCAACTCCACTAGCTGAGTGTAAGACAGAGTCAAGGCTGACATGCCTTTCTGGATCATCTATGAAATTGATCCCCAAGCAGGGAAAGGGTAATCCAAAAGTAGAAGATCAAATGATGGAAGGTGAATAG 1047 0.5224 MSNEGEEQAKPTTTRRRINLVAGSYERFIWGFNLNPNRQTLKPIFSYPSHLSVIKTLAVCGSVVASGGTDDTIHLYNLSNASSLGSLHDHSATVTALAFHSLPNIPHPTTLISADADGSVCIFDADSFVHLKTLPIHRKAVNDLALHPSGTLALTVSRDRCFAMVNLVRGRRSFCCRLDNEATIVKFNAAGDAFFMAADETVSVHQAEDARLLFQLQCPKRVLCAAPDKNGLLYTGGEDRNITAWDIKSGKVAYSIEEAHTARVKGIVVLGDCDGATEGDDPYLVASASSDGTIRVWDVRMAATEKPTPLAECKTESRLTCLSGSSMKLIPKQGKGNPKVEDQMMEGE* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1878 348 Gene3D - 198 338 IPR015943 GO:0005515
Lja6g1878 348 ProSiteProfiles Trp-Asp (WD) repeats profile. 284 300 IPR001680 GO:0005515
Lja6g1878 348 SUPERFAMILY WD40 repeat-like 20 323 IPR036322 GO:0005515
Lja6g1878 348 ProSiteProfiles Trp-Asp (WD) repeats profile. 232 255 IPR001680 GO:0005515
Lja6g1878 348 Pfam WD domain, G-beta repeat 84 124 IPR001680 GO:0005515
Lja6g1878 348 Pfam WD domain, G-beta repeat 277 298 IPR001680 GO:0005515
Lja6g1878 348 ProSitePatterns Trp-Asp (WD) repeats signature. 285 299 IPR019775 -
Lja6g1878 348 Gene3D - 11 197 IPR015943 GO:0005515
Lja6g1878 348 PRINTS G protein beta WD-40 repeat signature 233 247 IPR020472 -
Lja6g1878 348 PRINTS G protein beta WD-40 repeat signature 285 299 IPR020472 -
Lja6g1878 348 PRINTS G protein beta WD-40 repeat signature 64 78 IPR020472 -
Lja6g1878 348 PANTHER PAK1 INTERACTING PROTEIN 1 16 335 - -
Lja6g1878 348 SMART WD40_4 80 124 IPR001680 GO:0005515
Lja6g1878 348 SMART WD40_4 209 246 IPR001680 GO:0005515
Lja6g1878 348 SMART WD40_4 40 77 IPR001680 GO:0005515
Lja6g1878 348 SMART WD40_4 249 298 IPR001680 GO:0005515
Lja6g1878 348 SMART WD40_4 127 166 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1878 41 299 Miscellaneous Gene Families AT5G08390 18.533 5.65e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1878 K14830 - gmx:100777673 452.21