Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2222 ATGAGTTTGGTGGCAGGTTCGTACGAGAAATTCATCTGGGGTCTCACCCTAAAGCCCCAATCCCAAACCCTAACCCCTCTCTTCTCCTACCCTTCCCACCTCTCCTCCATCAAAACCGTCGCCGTCTCCGGCTCCGTCGTCGCCTCCGGTGGCGCCGACGACACCATTCAGCTCTACGATCTCTCCACCGCCTCCTCCCTCGGTTCCCTCCACCAACACTCCGCCTCCGTCACCGCCATCTCTTTCTACGCTCCTCCCAACCTCCCCTTCCCCCGCAACCTCATCTCCGCCGACGCCTCTGGCTCCCTCTCCATATTCGATGCCGACGGCTTCGTCCACCTCACCACGCTCTCCGTCCACCGCAACTCCGCCATCAACGACCTCGCCCTGCACCCCTCCGGCGAGCGCGCCCTAACCGTCGCCCGCGACAACTGCCTCGCCGTCGTCAACCTCGTCCGCGGCCGCCGCAACTGCTGCTTGCGCCTCGACAAGGAGGCTACTCTGGTCAAGTTCAATGCCTCCGGCGACCACTTTTTCATGGCCACGAAGGAGAAAGTTTCTGTCCACCAGACCGAAGATGCACGGATATTGTTCGAAATGGAATGCTCCAAGCCCGTTCTCTGCGCTGCTCCTGCTAGGAATGGACTTCTTTACACTGGTGGTGAGGACAAAAGTATCACAGCATGGGATATCAAGACTGGAAAAGTTGCATATTGCTTGGAAGATGCACATACTTCCCGTGTCAAAGGTATTGTTGTACTCACGGATACTGATGGTGCTACAGGGGATGATGACCCTTACCTAGTGGCATCTGCATCATCTGATGGCAATATACGTGTTTGGGATGTTCGAATGGCGGTCAGAGAGAAACCACTAGCTGAATATAACACTCGGTCAAGACTGACATGCCTTGCTGGAACAAGTCTGAGATTCCGACGACAAAGAGTGAAACGACAAAGAGTGGAGGATGAAAAGGAAGGAAAGGTGGATGATGAAACGATAGAAGGTTAA 1011 0.5519 MSLVAGSYEKFIWGLTLKPQSQTLTPLFSYPSHLSSIKTVAVSGSVVASGGADDTIQLYDLSTASSLGSLHQHSASVTAISFYAPPNLPFPRNLISADASGSLSIFDADGFVHLTTLSVHRNSAINDLALHPSGERALTVARDNCLAVVNLVRGRRNCCLRLDKEATLVKFNASGDHFFMATKEKVSVHQTEDARILFEMECSKPVLCAAPARNGLLYTGGEDKSITAWDIKTGKVAYCLEDAHTSRVKGIVVLTDTDGATGDDDPYLVASASSDGNIRVWDVRMAVREKPLAEYNTRSRLTCLAGTSLRFRRQRVKRQRVEDEKEGKVDDETIEG* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2222 336 Pfam WD domain, G-beta repeat 244 282 IPR001680 GO:0005515
Pvu9g2222 336 Pfam WD domain, G-beta repeat 26 60 IPR001680 GO:0005515
Pvu9g2222 336 ProSiteProfiles Trp-Asp (WD) repeats profile. 268 284 IPR001680 GO:0005515
Pvu9g2222 336 ProSitePatterns Trp-Asp (WD) repeats signature. 269 283 IPR019775 -
Pvu9g2222 336 PANTHER PAK1 INTERACTING PROTEIN 1 1 330 - -
Pvu9g2222 336 SMART WD40_4 110 150 IPR001680 GO:0005515
Pvu9g2222 336 SMART WD40_4 233 282 IPR001680 GO:0005515
Pvu9g2222 336 SMART WD40_4 23 60 IPR001680 GO:0005515
Pvu9g2222 336 SMART WD40_4 63 107 IPR001680 GO:0005515
Pvu9g2222 336 SMART WD40_4 193 230 IPR001680 GO:0005515
Pvu9g2222 336 Gene3D - 113 321 IPR015943 GO:0005515
Pvu9g2222 336 ProSiteProfiles Trp-Asp (WD) repeats profile. 216 239 IPR001680 GO:0005515
Pvu9g2222 336 ProSiteProfiles Trp-Asp (WD) repeats profile. 30 69 IPR001680 GO:0005515
Pvu9g2222 336 SUPERFAMILY WD40 repeat-like 11 305 IPR036322 GO:0005515
Pvu9g2222 336 PRINTS G protein beta WD-40 repeat signature 47 61 IPR020472 -
Pvu9g2222 336 PRINTS G protein beta WD-40 repeat signature 217 231 IPR020472 -
Pvu9g2222 336 PRINTS G protein beta WD-40 repeat signature 269 283 IPR020472 -
Pvu9g2222 336 Gene3D - 2 112 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2222 Pvu-Chr9 31802947 31806830 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2222 24 283 Miscellaneous Gene Families AT5G08390 20.532 7.21e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2222 K14830 - gmx:100777673 536.954