Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1600 ATGAGTTTGGTAGCGGGTTCATACGAGAAATTCATCTGGGGCTTCACCCTTCTCTCCAATTCCCAAACCCTAAACCCTCTTTTTTCTTACCCTTCCCATCTCTCCTCCATCAAGTCCGTCGCCGTCTCCGGCCCCGTCGTGGCCTCCGGCGGCGAGGACGACACCATCCAGCTTTATGACCTCGCCGCCGCCGCCTCCCTCGGCTCCCTCCACACCCACTCAGCCACCGTCACCGCCCTCTCCTTCTACGCCCCTCCCCACCTCCCCTTCCCCCGCAACCTCGTCTCCGCCGACGCCAGCGGCAACCTCTCCATCTTCGACGCCGACGGCTTTGTCCACCTCACGACGCTCTCCGTCCACCGCAATTCCGCCATCAATGACCTCGCCCTCCACCCCTCCGGCGAGCGGGCCCTCACTGTCGGCCGCGACGAGTGCCTCGCCGTGGTGAACCTCGTCCGGGGGCGCCGGAACTGCTGCCTGCGCCTAGGCAAGGAGGCGAGTCTGGTCAAGTTTGATGCCTCTGGGGATCAGTTCTTCATGGCGGTGAAGGAGAAGGTCTCCGTCCACCAGACCGAGGATGCGAGGATTCTGTTCGAATTGGAATGCCCAAAGCCTGTTCTCTGTGCTACACCTGCTAAGAATGGACTTCTTTATACTGGTGGGGAGGACCGAAATATCACAGCATGGGACATTAAGACTGGAAAAATTGCATATTGCTTGGAAGAAGCACATACTGCCCGTGTGAAAGGTATTGTTGCACTCACAGAGAGTGATGGTGCTACAGGGGATGATGACCCTTACCTAGTGGCATCTGCGTCATCTGATGGCATTATACGAGTCTGGGATGTTCGAATGGCTGCTAGAGAGAAGCCACTAACTGAACATAACACGCGGTCAAGACTGACGTGCCTTGCTGGATCATCTTTGAAATTCAAACGACAACGACCCCAGGATGGAAAAAGTAAATCGAAGGTGGTCAAACAACAGCGTGCCCTGTCTGGAAAGAGTAAATCAAAGGCGCATTGGATAGATGATTGGTGCAGGACATAA 1050 0.56 MSLVAGSYEKFIWGFTLLSNSQTLNPLFSYPSHLSSIKSVAVSGPVVASGGEDDTIQLYDLAAAASLGSLHTHSATVTALSFYAPPHLPFPRNLVSADASGNLSIFDADGFVHLTTLSVHRNSAINDLALHPSGERALTVGRDECLAVVNLVRGRRNCCLRLGKEASLVKFDASGDQFFMAVKEKVSVHQTEDARILFELECPKPVLCATPAKNGLLYTGGEDRNITAWDIKTGKIAYCLEEAHTARVKGIVALTESDGATGDDDPYLVASASSDGIIRVWDVRMAAREKPLTEHNTRSRLTCLAGSSLKFKRQRPQDGKSKSKVVKQQRALSGKSKSKAHWIDDWCRT* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1600 349 SMART WD40_4 63 107 IPR001680 GO:0005515
Gso15g1600 349 SMART WD40_4 193 230 IPR001680 GO:0005515
Gso15g1600 349 SMART WD40_4 233 282 IPR001680 GO:0005515
Gso15g1600 349 SMART WD40_4 23 60 IPR001680 GO:0005515
Gso15g1600 349 SMART WD40_4 110 150 IPR001680 GO:0005515
Gso15g1600 349 MobiDBLite consensus disorder prediction 311 337 - -
Gso15g1600 349 ProSiteProfiles Trp-Asp (WD) repeats profile. 268 284 IPR001680 GO:0005515
Gso15g1600 349 PANTHER PAK1 INTERACTING PROTEIN 1 1 333 - -
Gso15g1600 349 Pfam WD domain, G-beta repeat 25 60 IPR001680 GO:0005515
Gso15g1600 349 Pfam WD domain, G-beta repeat 255 282 IPR001680 GO:0005515
Gso15g1600 349 Gene3D - 204 314 IPR015943 GO:0005515
Gso15g1600 349 SUPERFAMILY WD40 repeat-like 18 305 IPR036322 GO:0005515
Gso15g1600 349 PRINTS G protein beta WD-40 repeat signature 47 61 IPR020472 -
Gso15g1600 349 PRINTS G protein beta WD-40 repeat signature 217 231 IPR020472 -
Gso15g1600 349 PRINTS G protein beta WD-40 repeat signature 269 283 IPR020472 -
Gso15g1600 349 ProSitePatterns Trp-Asp (WD) repeats signature. 269 283 IPR019775 -
Gso15g1600 349 ProSiteProfiles Trp-Asp (WD) repeats profile. 30 69 IPR001680 GO:0005515
Gso15g1600 349 Gene3D - 2 194 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1600 Gso-Chr15 22815876 22828272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1600 20 283 Miscellaneous Gene Families AT5G08390 20.147 7.13e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1600 K14830 - gmx:100777673 689.878