Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00288 ATGAGTTTGGTTGCAGGTTCGTACGAGAAATTCATCTGGGGTCTAACCCTAAAACCCCAATCCCAATCCCTAACCCCTCTCTTCTCCTACCCTTCCCACCTCTCCTCCATCAAAACCGTCGCCGTCTCCGGCTCCGTCGTTGCCTCCGGTGGCGACGACGACACCATCCACCTCTATGACCTCTCCGCCGCCTCCTCCCTCGGTTCCCTCCACCAACACTCCGCCTCCGTCACCGCCCTTTCTTTCTACGCTCCTCCCCACCTCCCCTTCCCCCGCAACCTCATCTCCGCCGACGCCGCTGGCTCCCTCGCAATCTTCGACGCCGATGGCTTCGTCCACCTTACCACGCTTTCCGTTCACCGCAACGCCGCCATCAACGACCTCGCCCTTCACCCCTCCGGTGAGCGCGCCCTAACCGTCGCCCGCGACAACTGTCTCGCCGTTGTCAACCTGGTCCGCGGCCGCCGCAACTGCTGCTTGCGCCTCGACAAGGAGGCTACTCTGGTCAAGTTCGATGCCTCCGGTGACCACTTTTTCATGGCCGCGAAGGAGACAGTTTCTGTCCACCAGACCGAGGATGCTCGGATATTGTTTGAACTGGAATGCTCCAAGCCCGTTCTCTGCGCTGCTCCTGCGAGGAATGGACTTCTTTACACTGGTGGTGAGGACAAAAATATCACAGCTTGGGATATCAAGACTGGAAAAGTTGCATATTGTTTGGAAGATGCACATACTTCCCGTGTCAAAGGTATTGTGGTGCTCACGGATACTGAAGGTGCTACAGGGGATGATGATCCTTACCTAGTGGCATCTGCATCATCTGATGGTAATATACGTGTCTGGGATGTTCGAATGGCAGCTAGAGAGAAACCACTAGCTGAATATAACACACGGTCAAGATTGACATGCCTTGCTGGAACAAGTCTGAGATGTAAGTTCTAA 942 0.5541 MSLVAGSYEKFIWGLTLKPQSQSLTPLFSYPSHLSSIKTVAVSGSVVASGGDDDTIHLYDLSAASSLGSLHQHSASVTALSFYAPPHLPFPRNLISADAAGSLAIFDADGFVHLTTLSVHRNAAINDLALHPSGERALTVARDNCLAVVNLVRGRRNCCLRLDKEATLVKFDASGDHFFMAAKETVSVHQTEDARILFELECSKPVLCAAPARNGLLYTGGEDKNITAWDIKTGKVAYCLEDAHTSRVKGIVVLTDTEGATGDDDPYLVASASSDGNIRVWDVRMAAREKPLAEYNTRSRLTCLAGTSLRCKF* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00288 313 SMART WD40_4 23 60 IPR001680 GO:0005515
Lapu9g00288 313 SMART WD40_4 193 230 IPR001680 GO:0005515
Lapu9g00288 313 SMART WD40_4 63 107 IPR001680 GO:0005515
Lapu9g00288 313 SMART WD40_4 110 150 IPR001680 GO:0005515
Lapu9g00288 313 SMART WD40_4 233 282 IPR001680 GO:0005515
Lapu9g00288 313 ProSiteProfiles Trp-Asp (WD) repeats profile. 30 69 IPR001680 GO:0005515
Lapu9g00288 313 PRINTS G protein beta WD-40 repeat signature 47 61 IPR020472 -
Lapu9g00288 313 PRINTS G protein beta WD-40 repeat signature 217 231 IPR020472 -
Lapu9g00288 313 PRINTS G protein beta WD-40 repeat signature 269 283 IPR020472 -
Lapu9g00288 313 Gene3D - 2 181 IPR015943 GO:0005515
Lapu9g00288 313 Pfam WD domain, G-beta repeat 26 60 IPR001680 GO:0005515
Lapu9g00288 313 Pfam WD domain, G-beta repeat 248 282 IPR001680 GO:0005515
Lapu9g00288 313 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 6 286 IPR011047 -
Lapu9g00288 313 ProSiteProfiles Trp-Asp (WD) repeats profile. 268 284 IPR001680 GO:0005515
Lapu9g00288 313 ProSitePatterns Trp-Asp (WD) repeats signature. 269 283 IPR019775 -
Lapu9g00288 313 Gene3D - 183 310 IPR015943 GO:0005515
Lapu9g00288 313 PANTHER PAK1 INTERACTING PROTEIN 1 1 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00288 Lapu-Chr9 2866477 2868051 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00288 24 283 Miscellaneous Gene Families AT5G08390 20.833 6.43e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00288 K14830 - gmx:100782530 545.814