Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2223 CCCGTGTTCTATGCCTCCCTCCTCCAAGCCTGCATCAAAGCCCACTCCTTCCTCCAGGGCACCCTCATCCACGCCCACGTCCTCAAATCGGGCCTCCTTGCCGACCGCTTCCTCGCCAACAGTCTTCTCTCCCTATACTTCAAACTCTCCCCCCACTTCGCCCAGGCCCGCACGCTCTTCGATGGGCTTTCCTTCAAAGACGTCATCGCCTGGACCTCCATCATCTCCGGCTACGTCCGAAAAGCCCAGCCCACCCACGCCCTCCGCCTCTTCCTCCAAATGCTCCGCCTTGGCCTCCGCCCCAACGCCTTCACCCTCTCCTCCCTCCTCAAAGCCTCATCCCAGCTCCCAAACCTTCCCCTTGGCAAGACCCTCCATGCCATCGTCGCCACGCGTGGCTTCAACTCCAACTGTGTCGTCTCCTGCGCGCTCATTGACATGTACGGGAGGACCAGCTTGGTCGACGACGCGCGCAGGGTGTTCGACGAATTGCCCCACCCGGACCCCGTCTGCTGGACGGCCTTTATCTCCACGTTGGCGCGTAACGACAGGTTTAGGGAGGCCGTACGGTTGTTTTCCGTCATGCACGACGGGGGTTTGGGGTTGGAGGTTGATGGTTTCACTTTCGGGACACTGTTGAACGCGTGTGGGCACTTGGGGTGGCTGAGGATGGGGAAAGAGGTGCATGGGAAGGTTGTGACTTTGGGGATGCGTGGGAATGTGGTTGTGGAGAGTAGTTTGTTGGATATGTATGGGAAGTGCGGCGATGTTGGGTGTGCGAGGGTAGTGTTTGATGGGTTGGAGGGGAGGAATTGGGTGTCTTGGACTGCTATGCTTGGAGTTTATTGTCACAATGGAGAATCTGAGAGTGTGCTTGGGCTTGTTAGGGAGTGGGCTGTGGTGGATGTTTATAGTTTTGGGACGATTATTCGTGCGTGTTCGGCGCTGGCTGCGGTGAGGCAAGGGAAGGAGGTGCATTGTCAGTATGTGAGGAAGGGAGGGTGGAGGGATGTGGTGGTGGAGTCTGCTTTGGTTGATATGTATGCGAAATGTGGGAGTGTGGATTTTGCATATAGGTTGTTTTTGAGGATGGAGGTGAGGAATTTGATCACGTGGAACTCCATGATTGGGGGGTTTGCGCAGAATGGGAGAGGGCAAGAGGGGTTGGAGTTGTTTGAGGAGATGGTGAAGGAGGGGGTGAGACCGGATGGGATCAGTTTTGTGAATGTTCTGTTTGCGTGTAGTCATAACGGTTTGGTTGATCGTGGGAGGAGGTATTTTGATTTGATGAAGAGGGAGTATGGGATTAGGCCTGGAGTGGTGCATTACACTTGCATGATTGATCTTCTTGGAAGGGCTGAGTTGATAGAGGAGGCTGAGCGTTTGTTGGAGGGTGCTGATTGCAGGTTTGATCATTCGGTTTGGTCGGTTCTGCTTGGAGCTTGCACTAAGTGTTCTGATTATATCACAGCTGAACGTGTTGCGAAAAAGATGATTCAGCTGGAGCCTGACTTCCATCTGAGTTATGTTCTGCTTAGTAATGTTTATAGAGCAGTTGGCCGTTGGAATGAGGCCCTGGAGATCAGGAGGTTGATGGAGGAAAGAGGTGTTAAGAAGATGCCTGGCACGAGCTGGATTGAAAGTGAGAAGCAAAAGGGTTCTCCTAGTTTTGATCTGAGCATTGTTCGGAAGAGCATGGGAGAGGCTGCGTGA 1713 0.5382 PVFYASLLQACIKAHSFLQGTLIHAHVLKSGLLADRFLANSLLSLYFKLSPHFAQARTLFDGLSFKDVIAWTSIISGYVRKAQPTHALRLFLQMLRLGLRPNAFTLSSLLKASSQLPNLPLGKTLHAIVATRGFNSNCVVSCALIDMYGRTSLVDDARRVFDELPHPDPVCWTAFISTLARNDRFREAVRLFSVMHDGGLGLEVDGFTFGTLLNACGHLGWLRMGKEVHGKVVTLGMRGNVVVESSLLDMYGKCGDVGCARVVFDGLEGRNWVSWTAMLGVYCHNGESESVLGLVREWAVVDVYSFGTIIRACSALAAVRQGKEVHCQYVRKGGWRDVVVESALVDMYAKCGSVDFAYRLFLRMEVRNLITWNSMIGGFAQNGRGQEGLELFEEMVKEGVRPDGISFVNVLFACSHNGLVDRGRRYFDLMKREYGIRPGVVHYTCMIDLLGRAELIEEAERLLEGADCRFDHSVWSVLLGACTKCSDYITAERVAKKMIQLEPDFHLSYVLLSNVYRAVGRWNEALEIRRLMEERGVKKMPGTSWIESEKQKGSPSFDLSIVRKSMGEAA* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2223 570 PANTHER OS07G0578800 PROTEIN-RELATED 1 553 IPR045215 GO:0003723|GO:0009451
Pvu9g2223 570 Gene3D Tetratricopeptide repeat domain 123 227 IPR011990 GO:0005515
Pvu9g2223 570 Gene3D Tetratricopeptide repeat domain 327 419 IPR011990 GO:0005515
Pvu9g2223 570 Gene3D Tetratricopeptide repeat domain 228 326 IPR011990 GO:0005515
Pvu9g2223 570 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 168 202 IPR002885 -
Pvu9g2223 570 Pfam E motif 490 547 IPR046848 -
Pvu9g2223 570 SUPERFAMILY TPR-like 454 543 IPR011990 GO:0005515
Pvu9g2223 570 Gene3D Tetratricopeptide repeat domain 420 565 IPR011990 GO:0005515
Pvu9g2223 570 Pfam PPR repeat 143 164 IPR002885 -
Pvu9g2223 570 Pfam PPR repeat 441 464 IPR002885 -
Pvu9g2223 570 Pfam PPR repeat 273 297 IPR002885 -
Pvu9g2223 570 Gene3D Tetratricopeptide repeat domain 1 122 IPR011990 GO:0005515
Pvu9g2223 570 TIGRFAM PPR: pentatricopeptide repeat domain 170 199 IPR002885 -
Pvu9g2223 570 TIGRFAM PPR: pentatricopeptide repeat domain 70 103 IPR002885 -
Pvu9g2223 570 TIGRFAM PPR: pentatricopeptide repeat domain 370 403 IPR002885 -
Pvu9g2223 570 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 67 101 IPR002885 -
Pvu9g2223 570 PANTHER OS06G0611200 PROTEIN 1 553 - -
Pvu9g2223 570 Pfam PPR repeat family 66 112 IPR002885 -
Pvu9g2223 570 Pfam PPR repeat family 368 414 IPR002885 -
Pvu9g2223 570 Pfam PPR repeat family 167 216 IPR002885 -
Pvu9g2223 570 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 368 402 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2223 Pvu-Chr9 31811845 31813557 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2223 4 547 Glycoside Hydrolase AT3G49170 35.805 1.34e-112 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2223 - - pvu:PHAVU_009G215500g 1133.24