Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g2644 ATGAAGAAGCTACACCACCACCTCCACTTGAAGCAGCAAGATATCATCTCCACCGACTCCCAAATCCTCCACCTCCTAAAAACCGGCTCTCTCTCTCACGCCATTAACCTTCTCAACACATCACAACCAACACTCTCTCTTAAACCAGTCATCTACGCTTCTCTCCTTCAAACCTGCGTCAAAACCTCCTCATTCCACCACGGCGTCTCCGTCCACGCTCACGTCCTCAAATCCGGTCTCCACTCCGACCGCTTCGTCGGCAACAGTCTCCTCACTCTCTACTTTAAGTTAAGCCCGGGCCCCCATTTATCTCAGGCCCGTCAGCTCTTCGACTCACTCAATGTCAAAGATGTTATTTCATGGACTTCACTTATCTCCGGTTATACTCGCTCCGGCATGCCACGTCAGTCGATATCTCTTTTCTATGAAATGCTGGGTTTTCCTATTCAGCCCAATGCATTCACACTATCGTCAGTTATCAAAGCTTGTTCATCGTTAAATGAGTTAATACTTGGGAAATGTTTTCATTCTATGGTTATAACACGTGGGTTTGATTCGAATACGGTTGTTTCGTGTTCGTTGATTGATATGTATGGTTGGAATCGTGCGGTTGATGATGCACGGAGGGTGTTTGATGAAATGCCTGATAGAGATGATGTGTTTTGTTGGACTTCGATTATATCGTGTTTTACAAGGAATGATATGTTTAGAGAGGCGTTGAGGTTGTTTTATGTTATGGTTAGGGTACATTGGTTGGTTCCGGATGGTTATACATTTGGGACGGTTTTGACTGCTTGTGCTAATTTAGGGTTGTTGAGGCAAGGTAAGGAGGTTCATGGGAAGGTTGTTGGTTTGGGTTTTGGAGGGAATGTTGTTGTTGAGAGTAGTTTGTTGGATATGTATGGGAAATGTGGGTGTGTTAGACATTCTAGGATTGTGTTTGATAGGTTGAGTGATGAGAAGAATAATGTGTCTTGGACTGCAATGCTTGGTGTGTATTGTCAGAATAAGGAGTATCAAAATGTGCTTGATCTTGTTAGGGAGAGGGGGGTTATGGATTTTTACGCGTTTGGGATTGTTCTTCGTGCGTGTTCGGGGTTGGCTGCAGTGAATAATGGGAAGGAGGTTCATTGTAAGTATGTGAGGAATGGTGGTTCGAAGGATGTTATAATTGAGTCTGCATTGGTTGATTTGTATGCTAAATGTGGTCTTGTTGATTTTGCACAAACAGTGTTTGAGCGTATGGAGGTTAGGAATTTGATCACGTGGAACTCGATGATTAGTGGGTTCGCGCAGAATGGAAGAGGGTTTGAGGCGTTGGCGTTATTTGAGGACATGATTAAGGAAGGGATTAAACCTGATTCCATCACTTTTGTTGCGGTTCTCTTTGCTTGTAGTCATGCAGGTTTGGTTGATGAAGGGAGAAGGTTTTTTGCTTTGATGGGGGAATATGGGATTAAGCCTGTTGTGGAACATTATAATTGCATGATCGATCTTTTGGGACGTGCTGAGTTTATAGAGGAGGCTGAGTGTTTGTTGGAGAATGCAGATTGCAGATATGATAAATCCCTTTGGGCAGCTCTTCTTGGAGCTTGTACTAAGTGTTCCGACTATATAACTGCTGAACGCATCGCAAAGAAGATGATTGAATTGGAGCCTGACTTCCATTTGAGTTATGTTCTGCTTGCTAACATTTACAGAGAAGTTGGCCGGTGGGATGATGCTCTGGAGATCAGGAAGTTGATGGAAGATAGAGGGGTTAAGAAGTTGCCTGGTAAGAGTTGGATTGATAGTGAAAATCGGAAGAGTTCTCATATGAATGTTTGTATGGTATAA 1836 0.4341 MKKLHHHLHLKQQDIISTDSQILHLLKTGSLSHAINLLNTSQPTLSLKPVIYASLLQTCVKTSSFHHGVSVHAHVLKSGLHSDRFVGNSLLTLYFKLSPGPHLSQARQLFDSLNVKDVISWTSLISGYTRSGMPRQSISLFYEMLGFPIQPNAFTLSSVIKACSSLNELILGKCFHSMVITRGFDSNTVVSCSLIDMYGWNRAVDDARRVFDEMPDRDDVFCWTSIISCFTRNDMFREALRLFYVMVRVHWLVPDGYTFGTVLTACANLGLLRQGKEVHGKVVGLGFGGNVVVESSLLDMYGKCGCVRHSRIVFDRLSDEKNNVSWTAMLGVYCQNKEYQNVLDLVRERGVMDFYAFGIVLRACSGLAAVNNGKEVHCKYVRNGGSKDVIIESALVDLYAKCGLVDFAQTVFERMEVRNLITWNSMISGFAQNGRGFEALALFEDMIKEGIKPDSITFVAVLFACSHAGLVDEGRRFFALMGEYGIKPVVEHYNCMIDLLGRAEFIEEAECLLENADCRYDKSLWAALLGACTKCSDYITAERIAKKMIELEPDFHLSYVLLANIYREVGRWDDALEIRKLMEDRGVKKLPGKSWIDSENRKSSHMNVCMV* 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g2644 611 Pfam E motif 540 597 IPR046848 -
Mal4g2644 611 Pfam PPR repeat family 219 268 IPR002885 -
Mal4g2644 611 Pfam PPR repeat family 116 164 IPR002885 -
Mal4g2644 611 Pfam PPR repeat family 419 465 IPR002885 -
Mal4g2644 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 454 488 IPR002885 -
Mal4g2644 611 PANTHER OS07G0578800 PROTEIN-RELATED 11 608 IPR045215 GO:0003723|GO:0009451
Mal4g2644 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 219 253 IPR002885 -
Mal4g2644 611 TIGRFAM PPR: pentatricopeptide repeat domain 421 455 IPR002885 -
Mal4g2644 611 TIGRFAM PPR: pentatricopeptide repeat domain 119 152 IPR002885 -
Mal4g2644 611 TIGRFAM PPR: pentatricopeptide repeat domain 221 255 IPR002885 -
Mal4g2644 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 117 151 IPR002885 -
Mal4g2644 611 Gene3D Tetratricopeptide repeat domain 470 610 IPR011990 GO:0005515
Mal4g2644 611 SUPERFAMILY TPR-like 201 578 IPR011990 GO:0005515
Mal4g2644 611 Gene3D Tetratricopeptide repeat domain 376 469 IPR011990 GO:0005515
Mal4g2644 611 Gene3D Tetratricopeptide repeat domain 174 280 IPR011990 GO:0005515
Mal4g2644 611 Gene3D Tetratricopeptide repeat domain 281 375 IPR011990 GO:0005515
Mal4g2644 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 419 453 IPR002885 -
Mal4g2644 611 Pfam PPR repeat 192 217 IPR002885 -
Mal4g2644 611 Pfam PPR repeat 492 514 IPR002885 -
Mal4g2644 611 Pfam PPR repeat 324 348 IPR002885 -
Mal4g2644 611 Gene3D Tetratricopeptide repeat domain 17 173 IPR011990 GO:0005515
Mal4g2644 611 PANTHER OS06G0611200 PROTEIN 11 608 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g2644 Mal-Chr4 72147071 72148906 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g2644 52 597 Glycoside Hydrolase AT3G49170 35.907 2.30e-108 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g2644 - - lja:Lj6g3v1093620.1 863.603