Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01908 ATGAAGAACCTCCGCCACTTCATCATACTCACCTCCACTGTTCCATCCCGCACCGAATCCCAGCTCCTCCACCACTGCAAACTCGGCGCTCTCCCCGAGGCCCTCACCCTCCTCAAAGCCCATGCCCAAGCCCAACCCCTCAGGCCCGTCCTCTACGCCTCCCTCCTCCAAGCCTGCACCAAAGCCCACTCCTTCGCCCTCGGCACCCACCTCCACGCCCATGTCCTCAAGTCGGGCCTCCTCGCCGACCGCTTCGTCGCCAACAGCCTCCTCTCGCTCTACTTCAAGCTCTCCCCAAACTTCTCCCAGGCCCGCGCCCTCTTCGACGCCCTCTCATTCAAAGACGCCATCGCATGGACTTCAATCATCTCCGGCTACGTCCAAAAAGCCCAGCCCAACAGCGCCGTACACCTTTTCATCCAAATGCTGGGCCTCGGCGTCGAGCCCAACGCCTTCACCCTCTCCTCCATCCTCAAAGCCTGCTCTCAGCTCCAAAACTTACCCCTCGGGAAAACCCTCCACGCCGTCGTCGCCACGCGCGGCTTCCACTCCAACCGCGTCGTCGCGTGCGCGCTCATCGACATGTACGGGAGGACGCGTGTGGTGGACGACGCGCGGAAGGTGTTCGACGAATTGCCCCAACCGGACTCCGTGTGCTGGACGGCCGTTATCTCGACGTTAGCGCGTAACGACAGGTTTAGGGACGCCGTGAAGTTGTTTTCTGCTATGCATGATGGGGGTTTGGGGTTGGAGGTTGACGGGTTCACGTTCGGGACTTTGCTGAACGCGTGTGGGAACTTGGGGTGGTTGAGGATGGGGAAGGAGGTGCATGGGAAGGTTGTGACGTTGGGGATGAAGGGGAATGTGGTTGTGGAGAGTAGTTTGTTGGATATGTATGGGAAGTGCGGCGAGGTTGGGTGTGCGAGGGTTGTGTTTGATGGGTTGGAAGGGAAGAATGGGGTGTCGTTGACTGCTATGCTTGGGGTGTATTGTCACAATGGGGAGTGTGAGAGTGTGCTTGGGCTTGTTAGGGAGTGGGGGGTGGTGGTGGATGTTTATAGTTTCGGGACGATTATTCGCGCATGCTCGGGTATGGCGGCGGTGAGGCAGGGGAAGGAGGTGCATTGTCAGTATGTGAGGAGGGGTGGGTGGAGGGATGTGGTGGTGGAGTCGGCTCTGGTTGATTTGTACGCAAAGTGTGGGAGTGTGGATTTCGCGTACCGGTTGTTTTTGAGGATGGAGGTGAGGAATTTGATCACGTGGAACGCGATGATTGGGGGGTTTGCGCAGAACGGGAGAGGGCAAGAGGGGGTGGAGTTGTTTGAGGAGATGGTGAAGGAGGGGGTGAGGCCAGACGGGATCAGTTTTGTGAATGTTCTTTTTGCGTGTAGTCATAACGGTTTGGTTGATCAAGGGAGGAGGTACTTTGATTTGATGAGGAGGGTGTATGGGATTAGGCCTGGGGTGGTGCATTACACTTGCATGATTGATCTTCTGGGAAGGGCTGAGTTGATAGAGGAGGCTGAGAGTTTGTTGGAGAGCGCTGATTGCAAGTATGATCATTCGCTTTGGGCGGTTCTGCTTGGAGCCTGCACTAAGTGTTCGGACTATGTCACGGCTGAATGCGTTGCGAAAAAGATGATTAAGCTGGAGCCTCACTTCCATCTGAGTTATGTTCTGCTCGGTAACATTTATAGAGCGGTTGGCAGGTGGAATGAGGCTCTGGAGATCAGGAAGTTGATGGAGGAAAGAGGGGTTAAGAAGACTCCTGGCAAGAGCTGGATTGAGAGTGAGAAGCAAAAGGGTTCTCCTCGATTTGATTTGGCCAATATAACCAGTTTTCCAAACATGGGAGAAGCTGTGTGA 1866 0.5563 MKNLRHFIILTSTVPSRTESQLLHHCKLGALPEALTLLKAHAQAQPLRPVLYASLLQACTKAHSFALGTHLHAHVLKSGLLADRFVANSLLSLYFKLSPNFSQARALFDALSFKDAIAWTSIISGYVQKAQPNSAVHLFIQMLGLGVEPNAFTLSSILKACSQLQNLPLGKTLHAVVATRGFHSNRVVACALIDMYGRTRVVDDARKVFDELPQPDSVCWTAVISTLARNDRFRDAVKLFSAMHDGGLGLEVDGFTFGTLLNACGNLGWLRMGKEVHGKVVTLGMKGNVVVESSLLDMYGKCGEVGCARVVFDGLEGKNGVSLTAMLGVYCHNGECESVLGLVREWGVVVDVYSFGTIIRACSGMAAVRQGKEVHCQYVRRGGWRDVVVESALVDLYAKCGSVDFAYRLFLRMEVRNLITWNAMIGGFAQNGRGQEGVELFEEMVKEGVRPDGISFVNVLFACSHNGLVDQGRRYFDLMRRVYGIRPGVVHYTCMIDLLGRAELIEEAESLLESADCKYDHSLWAVLLGACTKCSDYVTAECVAKKMIKLEPHFHLSYVLLGNIYRAVGRWNEALEIRKLMEERGVKKTPGKSWIESEKQKGSPRFDLANITSFPNMGEAV 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01908 621 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 172 271 - -
Pumo2g01908 621 Pfam E motif 539 596 IPR046848 -
Pumo2g01908 621 NCBIfam pentatricopeptide repeat 118 151 IPR002885 -
Pumo2g01908 621 NCBIfam pentatricopeptide repeat 419 452 IPR002885 -
Pumo2g01908 621 NCBIfam pentatricopeptide repeat 218 247 IPR002885 -
Pumo2g01908 621 Gene3D Tetratricopeptide repeat domain 17 173 IPR011990 GO:0005515
Pumo2g01908 621 Gene3D Tetratricopeptide repeat domain 247 365 IPR011990 GO:0005515
Pumo2g01908 621 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 115 149 IPR002885 -
Pumo2g01908 621 Gene3D Tetratricopeptide repeat domain 174 245 IPR011990 GO:0005515
Pumo2g01908 621 FunFam Pentatricopeptide repeat-containing protein At2g34400 375 603 - -
Pumo2g01908 621 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 38 600 IPR046960 GO:0003723|GO:0009451
Pumo2g01908 621 Pfam PPR repeat 321 345 IPR002885 -
Pumo2g01908 621 Pfam PPR repeat 490 513 IPR002885 -
Pumo2g01908 621 Pfam PPR repeat 191 212 IPR002885 -
Pumo2g01908 621 Gene3D Tetratricopeptide repeat domain 483 605 IPR011990 GO:0005515
Pumo2g01908 621 Gene3D Tetratricopeptide repeat domain 366 482 IPR011990 GO:0005515
Pumo2g01908 621 FunFam Putative pentatricopeptide repeat-containing protein, mitochondrial 18 171 - -
Pumo2g01908 621 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 417 451 IPR002885 -
Pumo2g01908 621 SUPERFAMILY TPR-like 411 577 IPR011990 GO:0005515
Pumo2g01908 621 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 216 250 IPR002885 -
Pumo2g01908 621 Pfam PPR repeat family 114 162 IPR002885 -
Pumo2g01908 621 Pfam PPR repeat family 215 264 IPR002885 -
Pumo2g01908 621 Pfam PPR repeat family 417 463 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01908 Pumo-Chr2 36570584 36573391 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01908 52 596 Glycoside Hydrolase AT3G49170 35.495 5.55e-113 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01908 - - gmx:100795078 1077