Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu9g2208 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco7g02546 . . . . . . . . . . . . . . Vimu10g00652 . . .
Pvu9g2209 . . . . Aev04g1816 . . . . . . . . . . . . . . . . . . . Gso15g1606 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu9g2210 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco7g02547 . . . . . . . . . . . . . . . . . .
Pvu9g2211 . . . Aed4g1096 . Ahy13g2510 . Aip03g02821 . . . Apr1g2522 . . . . . . . Dod03g1716 . . Gma15g01856 . . . . Lal21g1148 Lal4g1426 . Lan14g0053 Lan3g0934 Lapu9g00284 . . . . . Lja6g1874 . . . . . . Phco7g02548 . . Pste2g01036 . . . Spst9g02697 Ssu1g1740 . . . . . . Vimu10g00648 . . Vra5g0443
Pvu9g2212 . . . Aed4g1095 . Ahy13g2509 . Aip03g02820 . Amo13g2984 . Apr1g2520 . . . . . . . . . . . . Gso15g1604 . . Lal21g1149 Lal4g1427 . Lan14g0054 Lan3g0935 Lapu9g00285 Lasa1g04437 . . . . Lja6g1875 Mal4g2633 Mepo6g02104 Mesa5g02441 . Mtr2g1835 Phac9g03574 Phco7g02549 . Psa1g0470 Pste2g01037 . . . Spst9g02698 Ssu1g1739 . Tpr5g2796 . . . . . . Vivi4g01191 .
Pvu9g2213 . . . Aed4g1094 . . . . . . . . . . . . . . . Dod03g1715 . . . . . . Lal17g1418 Lal21g1150 . Lan15g0237 . Lan3g0936 Lapu9g00286 Lasa1g04439 . . . . Lja6g1876 Mal4g2634 Mepo6g02103 Mesa5g02442 . Mtr2g1834 . . . . Pste2g01041 . . . Spst9g02699 Ssu1g1738 . Tpr5g2795 . . . . Vimu10g00647 . . Vra5g0444
Pvu9g2214 . . . . . . . . . . . Apr1g2519 . . . . . . . . . . Gma15g01854 . . . . . . . . . . . . . . . . . Mepo6g02102 . . Mtr2g1833 . . . . . . . . . Ssu1g1737 . . . . . . . . . .
Pvu9g2215 . . . . Aev04g1828 . . . . . . . . . . . . . . Dod03g1714 . . . . . . . . Lal4g1429 . Lan14g0056 . . Lasa1g04440 . . . . Lja6g1877 Mal4g2635 . . . . . Phco7g02550 . . . . . . Spst9g02700 . . . . . . . . . Vivi4g01188 .
Pvu9g2216 . . . Aed4g1092 . . . . . . . . . . . . . . . . . . . Gma09g00796 . . . . . . . . . . . . . . . . . . . . . Phco7g02551 . . . . . . . . . . . . . . . . Vivi4g01186 .
Pvu9g2217 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco7g02554 . . . . . . . . . . . . . . Vimu10g00643 . . .
   
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Select Species Gene Chromosome Start End Strand
Pvu Pvu9g2208 Chr9 31674269 31675487 -
Phco Phco7g02546 Chr7 44297506 44298941 -
Vimu Vimu10g00652 Chr10 5564724 5566007 +
Pvu Pvu9g2209 Chr9 31676549 31679743 +
Aev Aev04g1816 Chr04 14453251 14455186 -
Gso Gso15g1606 Chr15 22947055 22949644 +
Pvu Pvu9g2210 Chr9 31693955 31695158 -
Phco Phco7g02547 Chr7 44303998 44305216 -
Pvu Pvu9g2211 Chr9 31708813 31710776 +
Aed Aed4g1096 Chr4 10279360 10281687 -
Ahy Ahy13g2510 Chr13 70051136 70053094 -
Aip Aip03g02821 Chr03 65972572 65974444 -
Apr Apr1g2522 Chr1 34794005 34795703 -
Dod Dod03g1716 Chr03 24773295 24775651 -
Gma Gma15g01856 Chr15 23092177 23092717 -
Lal Lal21g1148 Chr21 14109266 14111059 +
Lal Lal4g1426 Chr4 18450168 18452133 +
Lan Lan14g0053 Chr14 795909 797889 +
Lan Lan3g0934 Chr3 20509415 20511141 +
Lapu Lapu9g00284 Chr9 2820864 2823352 +
Lja Lja6g1874 Chr6 46033660 46035515 +
Phco Phco7g02548 Chr7 44310868 44312485 +
Pste Pste2g01036 Chr2 11014091 11015682 +
Spst Spst9g02697 Chr9 61051342 61052862 +
Ssu Ssu1g1740 Chr1 43056508 43058175 -
Vimu Vimu10g00648 Chr10 5549210 5550821 -
Vra Vra5g0443 Chr5 4653489 4655303 +
Pvu Pvu9g2212 Chr9 31712012 31713448 +
Aed Aed4g1095 Chr4 10275945 10278137 -
Ahy Ahy13g2509 Chr13 70041476 70043542 -
Aip Aip03g02820 Chr03 65966019 65967861 -
Amo Amo13g2984 Chr13 75357649 75359597 +
Apr Apr1g2520 Chr1 34783573 34785136 -
Gso Gso15g1604 Chr15 22928392 22930042 +
Lal Lal21g1149 Chr21 14117250 14119281 +
Lal Lal4g1427 Chr4 18454021 18456096 +
Lan Lan14g0054 Chr14 800489 802245 +
Lan Lan3g0935 Chr3 20513046 20514610 +
Lapu Lapu9g00285 Chr9 2824161 2825691 +
Lasa Lasa1g04437 Chr1 740299741 740300714 +
Lja Lja6g1875 Chr6 46036756 46038011 +
Mal Mal4g2633 Chr4 71805646 71806811 +
Mepo Mepo6g02104 Chr6 25044438 25045881 -
Mesa Mesa5g02441 Chr5 42723076 42724212 +
Mtr Mtr2g1835 Chr2 21705198 21706864 -
Phac Phac9g03574 Chr9 34867978 34869637 +
Phco Phco7g02549 Chr7 44314065 44315342 +
Psa Psa1g0470 Chr1 28177084 28178440 +
Pste Pste2g01037 Chr2 11019259 11021505 +
Spst Spst9g02698 Chr9 61054939 61056185 +
Ssu Ssu1g1739 Chr1 43049662 43051050 -
Tpr Tpr5g2796 Chr5 50501007 50502553 -
Vivi Vivi4g01191 Chr4 37861152 37862469 -
Pvu Pvu9g2213 Chr9 31714373 31719773 -
Aed Aed4g1094 Chr4 10268875 10274144 +
Dod Dod03g1715 Chr03 24682513 24687206 +
Lal Lal17g1418 Chr17 15642752 15646880 -
Lal Lal21g1150 Chr21 14119647 14125266 -
Lan Lan15g0237 Chr15 2668340 2672657 +
Lan Lan3g0936 Chr3 20517748 20530820 -
Lapu Lapu9g00286 Chr9 2825758 2832939 -
Lasa Lasa1g04439 Chr1 740328529 740330498 -
Lja Lja6g1876 Chr6 46039175 46042516 -
Mal Mal4g2634 Chr4 71811457 71813004 -
Mepo Mepo6g02103 Chr6 25040708 25043535 +
Mesa Mesa5g02442 Chr5 42727284 42728698 -
Mtr Mtr2g1834 Chr2 21701373 21704306 +
Pste Pste2g01041 Chr2 11023034 11027931 -
Spst Spst9g02699 Chr9 61060884 61062282 -
Ssu Ssu1g1738 Chr1 43040031 43041698 +
Tpr Tpr5g2795 Chr5 50496774 50500130 +
Vimu Vimu10g00647 Chr10 5545658 5546539 -
Vra Vra5g0444 Chr5 4656965 4662633 +
Pvu Pvu9g2214 Chr9 31731668 31732661 +
Apr Apr1g2519 Chr1 34773981 34776381 -
Gma Gma15g01854 Chr15 23051712 23053916 +
Mepo Mepo6g02102 Chr6 25031736 25036953 -
Mtr Mtr2g1833 Chr2 21687487 21694541 -
Ssu Ssu1g1737 Chr1 43024406 43026607 -
Pvu Pvu9g2215 Chr9 31732873 31733218 +
Aev Aev04g1828 Chr04 14540694 14541074 -
Dod Dod03g1714 Chr03 24676813 24679284 -
Lal Lal4g1429 Chr4 18462946 18465105 +
Lan Lan14g0056 Chr14 805681 808160 +
Lasa Lasa1g04440 Chr1 740352027 740354123 +
Lja Lja6g1877 Chr6 46046393 46048552 +
Mal Mal4g2635 Chr4 71856428 71858233 +
Phco Phco7g02550 Chr7 44324856 44327045 +
Spst Spst9g02700 Chr9 61068595 61074100 +
Vivi Vivi4g01188 Chr4 37840030 37842619 -
Pvu Pvu9g2216 Chr9 31734083 31736087 +
Aed Aed4g1092 Chr4 10231688 10235720 -
Gma Gma09g00796 Chr09 10753990 10756503 +
Phco Phco7g02551 Chr7 44331476 44333406 +
Vivi Vivi4g01186 Chr4 37824959 37829270 -
Pvu Pvu9g2217 Chr9 31738456 31740047 -
Phco Phco7g02554 Chr7 44357224 44361550 -
Vimu Vimu10g00643 Chr10 5528616 5529755 +