Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu9g1678 . . . . . . . . . . . . . . . . . . . . . . . . . . . Lal21g0777 . . . . . . . . . . . . . . . . . . . . Pste2g00355 . . . . . . . . . . . . . . .
Pvu9g1679 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lan15g0464 . . . . . . . . . . . . . . . . . . Pste2g00358 . . . . . . . . . . . . . . .
Pvu9g1680 . . . . . . . . . . . . . Bach2g02288 . Bva06g01540 . . . . . . . . . Gso6g1409 . . . . . . Lapu9g00945 Lasa5g03524 . . . . Lja1g4346 . . . . . . Phco7g01848 . . Pste2g00364 . . . Spst9g02169 . . . . . . . Vimu10g01463 . . Vra5g0637
Pvu9g1681 . . . Aed10g0781 Aev08g2432 . . . . Amo08g2410 . Apr1g0323 Arst3g03788 Bach2g02287 . Bva06g01539 Car05g02625 . . Dod09g0110 . . . . Gso4g1674 Gso6g1410 Lal17g0827 . . . . . Lapu9g00946 Lasa5g03526 . . . . Lja1g4342 Mal2g1353 Mepo3g06971 . . Mtr3g3488 Phac9g02701 Phco7g01838 . Psa5g1245 Pste2g00362 . . . Spst9g02167 Ssu1g2413 . Tpr3g3297 Trre5g04693 Tsu07g01157 . . Vimu10g01462 . . Vra5g0638
Pvu9g1682 . . . Aed10g0782 Aev08g2430 Ahy18g2928 Ahy8g2683 . . Amo08g2411 . Apr1g0322 Arst3g03786 . . Bva06g01538 Car05g02626 Cca03g00297 . Dod09g0112 . . . . Gso4g1673 . Lal17g0828 . . . . . Lapu9g00947 . . . . . Lja1g4341 Mal2g1352 Mepo3g06972 . . Mtr3g3489 Phac9g02702 Phco7g01837 . Psa5g1243 Pste2g00361 Pumo10g01850 Rops10g00840 Seca12g06414 Spst9g02162 Ssu1g2412 . Tpr3g3298 Trre5g04692 Tsu07g01156 Vian4g00983 Vifa2g03405 . . . .
Pvu9g1683 . . Adu08g02781 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Pste2g00368 . . . . . . . . . . . . . . .
Pvu9g1684 . . . . . . . Aip08g03324 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Pste2g00369 . . . . . . . . . . . . . . .
Pvu9g1685 . . . . . . . . . . . . . . . . . . . . . . . Gma06g01481 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu9g1686 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Pste2g00375 . . . . . . . . . . . Vimu10g01972 . . .
Pvu9g1687 . . . . . . . . . . . . . . . . . . . . . . . . . . . Lal21g0704 . . . Lan3g0698 . . . . . . . . . . . . . . . . Pste2g00376 . . . . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Arst Arst3g03788 Chr3 107599137 107600764 -
Vifa Vifa2g03405 Chr2 981619158 981620485 +
Arst Arst3g03786 Chr3 107561739 107563284 -
Seca Seca12g06414 Chr12 156157928 156159984 +
Pvu Pvu9g1678 Chr9 23635216 23637558 +
Lal Lal21g0777 Chr21 6559745 6565903 -
Pste Pste2g00355 Chr2 2817488 2819729 +
Pvu Pvu9g1679 Chr9 23647649 23659676 +
Lan Lan15g0464 Chr15 10659675 10669694 +
Pste Pste2g00358 Chr2 2917104 2927159 +
Pvu Pvu9g1680 Chr9 23670710 23672989 -
Bach Bach2g02288 Chr2 29466720 29468244 -
Bva Bva06g01540 Chr06 11060989 11063110 -
Gso Gso6g1409 Chr6 14000323 14003187 +
Lapu Lapu9g00945 Chr9 14609398 14611969 +
Lasa Lasa5g03524 Chr5 572608255 572609665 +
Lja Lja1g4346 Chr1 56129353 56131536 -
Phco Phco7g01848 Chr7 20219685 20221405 -
Pste Pste2g00364 Chr2 3025696 3028677 -
Spst Spst9g02169 Chr9 47893269 47894233 -
Vimu Vimu10g01463 Chr10 15851212 15853865 -
Vra Vra5g0637 Chr5 9796347 9800010 +
Pvu Pvu9g1681 Chr9 23692658 23700111 -
Aed Aed10g0781 Chr10 6468244 6470706 +
Aev Aev08g2432 Chr08 23262866 23264564 -
Amo Amo08g2410 Chr08 37810930 37813443 +
Apr Apr1g0323 Chr1 3894303 3896530 -
Arst Arst3g03788 Chr3 107599137 107600764 -
Bach Bach2g02287 Chr2 29458676 29461061 -
Bva Bva06g01539 Chr06 11051902 11053515 -
Car Car05g02625 Chr05 71286887 71289086 +
Dod Dod09g0110 Chr09 1547947 1596765 +
Gso Gso4g1674 Chr4 46673792 46676714 -
Gso Gso6g1410 Chr6 14014395 14017176 +
Lal Lal17g0827 Chr17 6136153 6138597 +
Lapu Lapu9g00946 Chr9 14660018 14667282 +
Lasa Lasa5g03526 Chr5 572938586 572940117 +
Lja Lja1g4342 Chr1 56096151 56098412 -
Mal Mal2g1353 Chr2 16254593 16256140 -
Mepo Mepo3g06971 Chr3 83366754 83368834 +
Mtr Mtr3g3488 Chr3 48762775 48764685 +
Phac Phac9g02701 Chr9 25732134 25741905 -
Phco Phco7g01838 Chr7 19762678 19772391 -
Psa Psa5g1245 Chr5 96097830 96099571 -
Pste Pste2g00362 Chr2 2985144 2987857 -
Spst Spst9g02167 Chr9 47707830 47708793 -
Ssu Ssu1g2413 Chr1 67383767 67385486 -
Tpr Tpr3g3297 Chr3 36309213 36311449 +
Trre Trre5g04693 Chr5 48857237 48859058 -
Tsu Tsu07g01157 Chr07 9875402 9877646 -
Vimu Vimu10g01462 Chr10 15796910 15798769 -
Vra Vra5g0638 Chr5 9840232 9842393 +
Pvu Pvu9g1682 Chr9 23718636 23720821 -
Aed Aed10g0782 Chr10 6485935 6488554 +
Aev Aev08g2430 Chr08 23241879 23245058 -
Ahy Ahy18g2928 Chr18 134237168 134239586 +
Ahy Ahy8g2683 Chr8 50231314 50233742 +
Amo Amo08g2411 Chr08 37850443 37853864 +
Apr Apr1g0322 Chr1 3873443 3876711 -
Arst Arst3g03786 Chr3 107561739 107563284 -
Bva Bva06g01538 Chr06 11042115 11044557 -
Car Car05g02626 Chr05 71292828 71296701 +
Cca Cca03g00297 Chr03 4478153 4480575 +
Dod Dod09g0112 Chr09 1636671 1640818 +
Gso Gso4g1673 Chr4 46663353 46666208 -
Lal Lal17g0828 Chr17 6148084 6151018 +
Lapu Lapu9g00947 Chr9 14683018 14685757 +
Lja Lja1g4341 Chr1 56065196 56067527 -
Mal Mal2g1352 Chr2 16245452 16249090 -
Mepo Mepo3g06972 Chr3 83372711 83377086 +
Mtr Mtr3g3489 Chr3 48767382 48772842 +
Phac Phac9g02702 Chr9 25791829 25794096 -
Phco Phco7g01837 Chr7 19727032 19729067 -
Psa Psa5g1243 Chr5 96043709 96046075 -
Pste Pste2g00361 Chr2 2944868 2947739 -
Pumo Pumo10g01850 Chr10 24391381 24393704 +
Rops Rops10g00840 Chr10 19225435 19228052 -
Seca Seca12g06414 Chr12 156157928 156159984 +
Spst Spst9g02162 Chr9 47257492 47259565 -
Ssu Ssu1g2412 Chr1 67320177 67349624 -
Tpr Tpr3g3298 Chr3 36316766 36321201 +
Trre Trre5g04692 Chr5 48844824 48847258 -
Tsu Tsu07g01156 Chr07 9865482 9866444 -
Vian Vian4g00983 Chr4 14792825 14794550 +
Vifa Vifa2g03405 Chr2 981619158 981620485 +
Pvu Pvu9g1683 Chr9 23748375 23748935 +
Adu Adu08g02781 Chr08 44351427 44351981 -
Pste Pste2g00368 Chr2 3103856 3105511 +
Pvu Pvu9g1684 Chr9 23749984 23751619 -
Aip Aip08g03324 Chr08 124441280 124443037 +
Pste Pste2g00369 Chr2 3152865 3155654 -
Pvu Pvu9g1685 Chr9 23764618 23766881 +
Gma Gma06g01481 Chr06 14225383 14227098 -
Pvu Pvu9g1686 Chr9 23781319 23782704 +
Pste Pste2g00375 Chr2 3195816 3197063 +
Vimu Vimu10g01972 Chr10 28753741 28757521 +
Pvu Pvu9g1687 Chr9 23793447 23798337 +
Lal Lal21g0704 Chr21 5626088 5630618 -
Lan Lan3g0698 Chr3 12141393 12144764 +
Pste Pste2g00376 Chr2 3201755 3205962 +