Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0698 ATGATCGAGTTTGCTCGTATTCAGAAGGAGCTTGTTGAATGTAGCAAAGACACTGAAGGATCAGGCATCAGAGTTACGCCGAAAACCGATAACCTTGTCCGTCTCAATGGCACCATTCCTGGCCCTCTTGGTACTCCCTATGAAGGGGGAATTTTCCAAATTGATATCACTATTCCAGATGGGTACCCATTTGAACCACCTAAGATGAAGTTTGCAACCAAAGTTTGGCACCCTAATATCAGTAGCCAGAGTGGAGCTATTTGCCTGGACATCTTGAAAGATCAGTGGAGCCCTGCACTCACTCTGAAGACTGCACTTCTTTCCGTGCAAGCACTTCTCTCTGCTCCCCAGCCTGATGATCCTCAAGATGCTGTTGTAGCACAGCAGTATCTGAAAGAGTATCAGACATTTGTTAGCACTGCTCGTTACTGGACGGAAAGTTTTGCAAAGACATCTTCTCGTGGGATTGAAGATAAGGTACAGAAACTTGTAGAGATGGGGTTCCCTGAAGCTCAAGTAAGGAGCATTTTGGAAGCTGTTGGCGGTGACGAAAACTTGGCTCTTGAAAGGCTGCTGTAG 579 0.4629 MIEFARIQKELVECSKDTEGSGIRVTPKTDNLVRLNGTIPGPLGTPYEGGIFQIDITIPDGYPFEPPKMKFATKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPQPDDPQDAVVAQQYLKEYQTFVSTARYWTESFAKTSSRGIEDKVQKLVEMGFPEAQVRSILEAVGGDENLALERLL* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0698 192 Gene3D - 157 192 - -
Lan3g0698 192 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 1-RELATED 4 187 - -
Lan3g0698 192 Pfam UBA/TS-N domain 157 191 IPR015940 -
Lan3g0698 192 SUPERFAMILY UBA-like 132 192 IPR009060 GO:0005515
Lan3g0698 192 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 155 192 IPR015940 -
Lan3g0698 192 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 4 187 - -
Lan3g0698 192 CDD UBA_II_E2_UBC27_like 157 192 IPR041974 -
Lan3g0698 192 CDD UBCc 6 145 IPR000608 -
Lan3g0698 192 Pfam Ubiquitin-conjugating enzyme 6 144 IPR000608 -
Lan3g0698 192 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 2 150 IPR000608 -
Lan3g0698 192 SMART ubc_7 5 150 - -
Lan3g0698 192 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 76 92 IPR023313 -
Lan3g0698 192 SUPERFAMILY UBC-like 6 150 IPR016135 -
Lan3g0698 192 Gene3D Ubiquitin Conjugating Enzyme 2 152 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0698 Lan-Chr3 12141393 12144764 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0698 6 164 Miscellaneous Gene Families AT3G17000 26.829 2.32e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0698 K04649 - gmx:100527458 360.918