Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g00376 CGGCACCAGGAAATTAGAACGGCGTTTCCACGGGGCGGAATAAATAACAAAAAATAAAAAATAAAAAAAAAATAAGAAAAAGAAAGCAATAAAATACACTAACATCACTGAAGGCACGCCACTCACCAGTGAAAAGCGACACAAGACAACACAACACAACACAAAGTTTTATTCTCGCTTCTTCTGTACAGCACCCAAGATTGAAGATGATAGACATTGCGCGCGTGCAGAAGGAGCTTGTCGAGTGCAGTAAGGACGCCGAGGGATCGGGCATCAAGGTCAGTCCCAAAAGCGACAACCTTGTTCTCTTGATCGGCACCATTCCTGGTCCTGTCGGAACTCCCTATGAAGGGGGCATTTTCCACATTGATATCACATTGCCAGATGGTTACCCGTTTGAACCCCCCAAGATGCAGTTTAAAACCAAAGTTTGGCACCCTAATATCAGCAGCCAAAGTGGAGCTATTTGCCTGGACATCTTGAAGGACCAGTGGAGCCCAGCACTCACCCTGAAAACTGCACTTCTTTCTGTGCAAGCACTTCTCTCTGCTCCTCAGCCTGATGATCCTCAGGATGCCGTGGTGGCACAGCAGTATCTGAAAGACTATCAGACATTTGTTAGCACTGCTCGCTACTGGACAGAAAGTTTTGCCAAGGTATCGTCACGTGGGATTGAAGACAAGGTACAGAAACTCGTAGAGATGGGATTTCCAGAAGCTCAAGTAAGGAGCATTTTGGAAGCTGTTGGTGGAGATGAAAATTTGGCTCTTGAAAGGTTGCTGTAAAGCCCCAAGTGTGAAATATCGTCTAAAGCGTTTTGATCATGGTCAACTTTAGGATATGACATGTCGCCATAAGACGATGGAACCATAGACATAAAGGTTTAATTGAATATAGAGTCATATAAGTCTACTTGGTATATCTTATAGTCTTTTTTTCACTATGCTTTCTTTTTCTCCTCAGAAACTACGATACTCGACTTTATCAGCTATGAAATTAAATACCTTATTGGCAAGTTTCCGATAAGGTTTCTGC 1035 0.4329 MIDIARVQKELVECSKDAEGSGIKVSPKSDNLVLLIGTIPGPVGTPYEGGIFHIDITLPDGYPFEPPKMQFKTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPQPDDPQDAVVAQQYLKDYQTFVSTARYWTESFAKVSSRGIEDKVQKLVEMGFPEAQVRSILEAVGGDENLALERLL 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g00376 192 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 2 150 IPR000608 -
Pste2g00376 192 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 76 92 IPR023313 -
Pste2g00376 192 SUPERFAMILY UBA-like 157 192 IPR009060 GO:0005515
Pste2g00376 192 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 37 137 - -
Pste2g00376 192 SUPERFAMILY UBC-like 6 150 IPR016135 -
Pste2g00376 192 FunFam Ubiquitin-conjugating enzyme E2 27 156 192 - -
Pste2g00376 192 Gene3D - 157 192 - -
Pste2g00376 192 Gene3D Ubiquitin Conjugating Enzyme 2 152 IPR016135 -
Pste2g00376 192 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 150 192 IPR015940 -
Pste2g00376 192 CDD UBCc 6 145 IPR000608 -
Pste2g00376 192 SMART ubc_7 5 150 - -
Pste2g00376 192 FunFam ubiquitin-conjugating enzyme E2 27 1 152 - -
Pste2g00376 192 CDD UBA_II_E2_UBC27_like 157 192 IPR041974 -
Pste2g00376 192 Pfam UBA/TS-N domain 157 191 IPR015940 -
Pste2g00376 192 Pfam Ubiquitin-conjugating enzyme 6 144 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g00376 Pste-Chr2 3201755 3205962 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g00376 4 164 Miscellaneous Gene Families AT3G17000 27.108 1.65e-11 60.1