Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4342 ATGTCTCACAGTCACCTATCTTTTGCATTTGGGGTTCTAGGTAACATTGCCTCCTTCATCTGCTTCCTTGCACCAGTACCTACATTTTATAGAATCTGTAAAAAAAAATCAACAGAAGGGTTCCAATCAATTCCATATGTGGCAGCTCTCTTCAGTGCAATGCTTTGGATATTTTATGCCTATGTCAAAACCGGAGAAATGCTACTTATCACCATTAATGCATTTGGCTGTGTGATTGAGACAATTTACCTTGCCATCTATGTTACTTACTGCTCCAAAAAATCTAGAATTTCAACATTGAGGATGATTATCTTGTTGAACTTTATTGGATTGGGCTCTATTGTAGTTCTAACCAACATCCTAGCAAAAGGAGAAGGCCGTGTCAAGCTTCTTGGATGGATTTGTGTAGTGTTTGCTACTAGTGTTTTTGCTGCACCTTTAAGTATTATGCGGACAGTTATTCGCACGAAAAGCGTAGAGTTTCTTCCATTTCCACTTTCACTTCTCCTCCTGATTAGCGCAATTTTGTGGCTGTTATATGGAATTTCATTGAAAGATATCTATGTTACGCTCCCTAACGTTGTGGGCTTAGCATTTGGAATGATTCAGATGATACTATATGCAATTTACAGAAACAACGTCCCTGTAAAGGATGAGAAGCTTCCAGAACACAAGGGGGAGATCAACAATGATAAAAATGTAGCTCCAACTGTGAGTGATGAGAAACAAGAACAGAGTATTGAGATTGTGGAGAAGAAGGAAGAGAAGGAAGATGAGCATCCTAATGAGAAGAAGCAGGACCAAGTAGCTAATGACAAAACAGAGCTCAAGAAAACAGGGGATGATAGTGAGAATTGCCAAGTTTAA 867 0.3899 MSHSHLSFAFGVLGNIASFICFLAPVPTFYRICKKKSTEGFQSIPYVAALFSAMLWIFYAYVKTGEMLLITINAFGCVIETIYLAIYVTYCSKKSRISTLRMIILLNFIGLGSIVVLTNILAKGEGRVKLLGWICVVFATSVFAAPLSIMRTVIRTKSVEFLPFPLSLLLLISAILWLLYGISLKDIYVTLPNVVGLAFGMIQMILYAIYRNNVPVKDEKLPEHKGEINNDKNVAPTVSDEKQEQSIEIVEKKEEKEDEHPNEKKQDQVANDKTELKKTGDDSENCQV* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4342 288 Pfam Sugar efflux transporter for intercellular exchange 9 94 IPR004316 GO:0016021
Lja1g4342 288 Pfam Sugar efflux transporter for intercellular exchange 130 213 IPR004316 GO:0016021
Lja1g4342 288 Gene3D - 9 96 - -
Lja1g4342 288 PANTHER RAG1-ACTIVATING PROTEIN 1 5 272 - -
Lja1g4342 288 PANTHER BIDIRECTIONAL SUGAR TRANSPORTER SWEET 5 272 - -
Lja1g4342 288 MobiDBLite consensus disorder prediction 221 288 - -
Lja1g4342 288 Gene3D - 127 220 - -
Lja1g4342 288 MobiDBLite consensus disorder prediction 244 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4342 Lja-Chr1 56096151 56098412 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4342 1 269 Miscellaneous Gene Families AT5G50800 52.740 1.16e-98 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4342 K15382 - gmx:100791106 395.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4342 1 56096151 56098412 Lja4g0473 4 3871343 3873318 ECH
Lja1g4342 1 56096151 56098412 Lja1g4342 1 56096151 56098412 ECH
Lja4g0473 4 3871343 3873318 Lja1g4342 1 56096151 56098412 PCT