Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1687 ATGATAGACTTTGCGCGCGTGCAGAAGGAGCTGGTGGAATGCAGCAAGGACTCAGAGGGATCGGGCATCAAAGTGAGTCCGAAAAGCGACGATCTTGTCCAGTTATTCGGCACCATTCCGGGTCCTGTTGGAACACCCTATGAAGGAGGCATTTTTCAGATTGATATCACATTGCCAGAGGGATACCCGTTTGAACCCCCCAAGATGCAGTTCAAGACCAAAGTTTGGCACCCTAATATCAGCAGCCAAAGTGGAGCTATTTGCCTGGACATCTTGAAGGACCAGTGGAGCCCGGCACTCACTCTGAAGACTGCACTTCTTTCTGTGCAAGCACTTCTCTCCGCCCCTCAGCCTGATGATCCTCAAGATGCTGTGGTGGCACAGCAGTATCTGAAAGACTATCAGACATTTGTTAGCACTGCCCGCTACTGGACTGAAAGTTTTGCCAAGGCATCAACACGCGGGATTGAAGACAAGGTACAGAAACTGGTTGAGATGGGATTTCCAGAAGCTCAAGTAAGGAACATTCTGGAAGCTGTTGGTGGTGATGAAAACTTGGCTCTTGAAAGGTTGCTGTAG 579 0.4957 MIDFARVQKELVECSKDSEGSGIKVSPKSDDLVQLFGTIPGPVGTPYEGGIFQIDITLPEGYPFEPPKMQFKTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPQPDDPQDAVVAQQYLKDYQTFVSTARYWTESFAKASTRGIEDKVQKLVEMGFPEAQVRNILEAVGGDENLALERLL* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1687 192 Gene3D Ubiquitin Conjugating Enzyme 2 152 IPR016135 -
Pvu9g1687 192 SUPERFAMILY UBA-like 156 192 IPR009060 GO:0005515
Pvu9g1687 192 Pfam Ubiquitin-conjugating enzyme 6 144 IPR000608 -
Pvu9g1687 192 Pfam UBA/TS-N domain 157 191 IPR015940 -
Pvu9g1687 192 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 2 150 IPR000608 -
Pvu9g1687 192 Gene3D - 157 192 - -
Pvu9g1687 192 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 155 192 IPR015940 -
Pvu9g1687 192 SMART ubc_7 5 150 - -
Pvu9g1687 192 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 1-RELATED 3 187 - -
Pvu9g1687 192 CDD UBCc 6 145 IPR000608 -
Pvu9g1687 192 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 76 92 IPR023313 -
Pvu9g1687 192 SMART uba_6 156 192 IPR015940 -
Pvu9g1687 192 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 187 - -
Pvu9g1687 192 SUPERFAMILY UBC-like 6 150 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1687 Pvu-Chr9 23793447 23798337 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1687 27 164 Miscellaneous Gene Families AT3G17000 27.972 2.36e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1687 K04649 - gmx:100808816 367.081