Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu9g1688 . . . . . . . . . . . . Arst3g02740 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu9g1689 . . . . . . . . . . . . . . . . . . . . . . Gma04g01929 . . . . . Lal4g0694 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Vimu10g01606 . . .
Pvu9g1690 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Pste2g00271 . . . . . . . . . . . Vimu10g01605 . . .
Pvu9g1691 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu9g1692 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Vivi3g02222 .
Pvu9g1693 . . . . . . . . . . . . . . . . . . . . . . Gma04g01916 . . . . . . . . . . . . . . . . . . . . . . . . . Pste2g00338 . . . . . . . . . . . . . . .
Pvu9g1694 . . Adu08g02793 Aed10g0788 Aev08g2420 Ahy18g2936 Ahy8g2691 Aip08g03336 . Amo08g2418 . Apr1g0315 Arst3g03769 Bach2g02278 . Bva06g01527 Car05g02632 Cca03g00305 . Dod09g0122 . . Gma04g01915 Gma06g01491 Gso4g1668 Gso6g1417 . . . . . . Lapu9g00973 Lasa5g03536 . . . . Lja1g4331 Mal2g1345 Mepo3g06979 Mesa9g04525 . Mtr3g3495 . . . Psa5g3299 Pste2g00327 Pumo10g01857 Rops10g00833 Seca4g01744 Spst9g02155 Ssu1g2403 . Tpr3g3313 Trre5g04681 Tsu07g01149 . Vifa2g03421 . . Vivi3g02194 .
Pvu9g1695 . . Adu08g02794 Aed10g0789 . Ahy18g2938 Ahy8g2692 Aip08g03338 . Amo08g2421 . Apr1g0314 Arst8g03845 . . . Car05g02633 Cca03g00306 . Dod09g0123 . . Gma04g01914 Gma06g01492 Gso4g1667 Gso6g1418 Lal17g0836 . . Lan15g0463 . . . Lasa5g03537 . . . . . . Mepo3g06980 Mesa9g04526 . Mtr3g3496 . . . . Pste2g00325 Pumo10g01858 . Seca4g01743 Spst9g02153 Ssu1g2402 . Tpr3g3314 Trre5g04680 . Vian4g00977 . Vimu10g01450 . . Vra5g0646
Pvu9g1696 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco7g01935 . . . . . . . . . . . . . . . . . .
Pvu9g1697 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco7g01937 . . . . . . . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Pvu Pvu9g1688 Chr9 23819729 23824309 +
Arst Arst3g02740 Chr3 41689939 41692864 -
Pvu Pvu9g1689 Chr9 23825172 23831886 +
Gma Gma04g01929 Chr04 49646298 49652181 +
Lal Lal4g0694 Chr4 5530793 5536187 -
Vimu Vimu10g01606 Chr10 18725863 18731021 -
Pvu Pvu9g1690 Chr9 23841847 23844091 -
Pste Pste2g00271 Chr2 1898339 1900018 +
Vimu Vimu10g01605 Chr10 18670760 18674120 +
Pvu Pvu9g1691 Chr9 23855532 23859223 -
Pvu Pvu9g1692 Chr9 23877255 23878461 -
Vivi Vivi3g02222 Chr3 36660209 36661300 -
Pvu Pvu9g1693 Chr9 23886282 23886512 -
Gma Gma04g01916 Chr04 49469395 49469622 +
Pste Pste2g00338 Chr2 2591428 2591649 +
Pvu Pvu9g1694 Chr9 23893681 23895421 -
Adu Adu08g02793 Chr08 44498536 44501079 -
Aed Aed10g0788 Chr10 6534137 6535246 -
Aev Aev08g2420 Chr08 23171842 23172760 +
Ahy Ahy18g2936 Chr18 134392874 134395258 -
Ahy Ahy8g2691 Chr8 50364956 50367684 -
Aip Aip08g03336 Chr08 124616223 124619499 -
Amo Amo08g2418 Chr08 37956032 37959292 -
Apr Apr1g0315 Chr1 3739153 3740629 +
Arst Arst3g03769 Chr3 106428733 106430175 +
Bach Bach2g02278 Chr2 29391152 29392026 +
Bva Bva06g01527 Chr06 10981310 10982066 +
Car Car05g02632 Chr05 71338049 71339656 -
Cca Cca03g00305 Chr03 4645305 4647341 -
Dod Dod09g0122 Chr09 1834405 1836156 -
Gma Gma04g01915 Chr04 49460375 49462199 +
Gma Gma06g01491 Chr06 14372154 14374189 -
Gso Gso4g1668 Chr4 46565284 46566858 +
Gso Gso6g1417 Chr6 14091667 14093585 -
Lapu Lapu9g00973 Chr9 15062672 15063555 -
Lasa Lasa5g03536 Chr5 573617219 573618016 -
Lja Lja1g4331 Chr1 55950848 55952378 +
Mal Mal2g1345 Chr2 16162189 16163152 +
Mepo Mepo3g06979 Chr3 83443647 83445076 -
Mesa Mesa9g04525 Chr9 78893339 78894290 -
Mtr Mtr3g3495 Chr3 48830203 48831442 -
Psa Psa5g3299 Chr5 257471170 257473058 -
Pste Pste2g00327 Chr2 2510462 2511405 +
Pumo Pumo10g01857 Chr10 24523098 24524207 -
Rops Rops10g00833 Chr10 19135826 19137231 +
Seca Seca4g01744 Chr4 28305047 28307182 +
Spst Spst9g02155 Chr9 47132294 47133130 +
Ssu Ssu1g2403 Chr1 67053352 67054713 +
Tpr Tpr3g3313 Chr3 36543175 36544642 -
Trre Trre5g04681 Chr5 48780259 48781286 +
Tsu Tsu07g01149 Chr07 9781030 9782879 +
Vifa Vifa2g03421 Chr2 988032088 988032881 -
Vivi Vivi3g02194 Chr3 36187328 36188458 +
Pvu Pvu9g1695 Chr9 23907347 23913263 +
Adu Adu08g02794 Chr08 44505022 44508828 +
Aed Aed10g0789 Chr10 6537587 6539293 +
Ahy Ahy18g2938 Chr18 134410146 134415378 +
Ahy Ahy8g2692 Chr8 50378831 50382808 +
Aip Aip08g03338 Chr08 124632804 124637663 +
Amo Amo08g2421 Chr08 37974467 37979583 +
Apr Apr1g0314 Chr1 3729845 3732580 -
Arst Arst8g03845 Chr8 48908758 48912529 +
Car Car05g02633 Chr05 71343020 71345098 +
Cca Cca03g00306 Chr03 4667025 4672902 +
Dod Dod09g0123 Chr09 1841157 1843370 +
Gma Gma04g01914 Chr04 49442722 49446026 -
Gma Gma06g01492 Chr06 14378682 14382292 +
Gso Gso4g1667 Chr4 46548001 46551674 -
Gso Gso6g1418 Chr6 14098274 14102099 +
Lal Lal17g0836 Chr17 6265091 6267687 +
Lan Lan15g0463 Chr15 10618785 10621305 -
Lasa Lasa5g03537 Chr5 573716967 573718780 +
Mepo Mepo3g06980 Chr3 83448861 83451465 +
Mesa Mesa9g04526 Chr9 78897985 78900701 +
Mtr Mtr3g3496 Chr3 48834054 48837359 +
Pste Pste2g00325 Chr2 2480473 2485503 -
Pumo Pumo10g01858 Chr10 24544805 24547532 +
Seca Seca4g01743 Chr4 28248111 28255465 -
Spst Spst9g02153 Chr9 46894644 46900846 -
Ssu Ssu1g2402 Chr1 67015536 67016969 -
Tpr Tpr3g3314 Chr3 36547051 36549847 +
Trre Trre5g04680 Chr5 48772882 48775514 -
Vian Vian4g00977 Chr4 14536342 14557718 -
Vimu Vimu10g01450 Chr10 15622839 15626140 -
Vra Vra5g0646 Chr5 10029762 10035895 +
Pvu Pvu9g1696 Chr9 23935079 23937953 -
Phco Phco7g01935 Chr7 28150839 28152784 -
Pvu Pvu9g1697 Chr9 23976143 23991033 +
Phco Phco7g01937 Chr7 30138272 30138629 +