Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0638 ATGGCCATTAACCATGAAACTTGGGCTTTTGTTTTTGGCCTTCTAGGCAACGTCATCTCCTTCATGGTGTTTCTTGCTCCATTACCAACATTTTACCAAATCTACAAGAAGAAAACTGCAGAAGGATTTCAATCACTGCCATATGTTGTTGCACTGTTCAGCTCAATGCTCTGGATTTATTACGCACTCGTAAAGAAGGATGCTAGCCTCCTTCTTATTACCATTAACTCCTTTGGATGTGTGATTGAGTCAATTTACCTTCTCATCTTCCTAGTTTATGCCCCAAGTAAAACCAGGCTTTCGACCATCAAGCTTCTTCTCTTGTTGAATGTTTTTGGGTTCGGAGCCATGCTTCTTTCAACCCTCTACTTTACAACAGGATCCAAACGTCTTTCTGTTATTGGATGGATTTGCCTAGTTTTCAACATTAGTGTGTTTGCTGCTCCTCTCTGCATTCTGAAACGTGTCATCCAAACCAAGAGCGTGGAATTCATGCCTTTCAGTTTGTCCTTCTTTTTGACCGTAAATGCTGTCATGTGGTTCTTCTATGGCCTTCTTCTCAAGGACTACTACATCGCTCTCCCAAATACGCTTGGATTTGTGTTTGGGATAATTCAGATGGTGCTGTATTTGGTATATAGAAACGCAAAGCCAAAGACATTGGAGGAGCCAACCAAGTTACAGGAACTAAATGGCCATATTGTTGACGTGGTGAAGTTGGGAACAATGACACCCTCAGAGCCGAATCATGTCACAAAAAGTGGTGCTGTGACGGAGACAGCTAGCAACGTGTGA 795 0.4239 MAINHETWAFVFGLLGNVISFMVFLAPLPTFYQIYKKKTAEGFQSLPYVVALFSSMLWIYYALVKKDASLLLITINSFGCVIESIYLLIFLVYAPSKTRLSTIKLLLLLNVFGFGAMLLSTLYFTTGSKRLSVIGWICLVFNISVFAAPLCILKRVIQTKSVEFMPFSLSFFLTVNAVMWFFYGLLLKDYYIALPNTLGFVFGIIQMVLYLVYRNAKPKTLEEPTKLQELNGHIVDVVKLGTMTPSEPNHVTKSGAVTETASNV* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0638 264 PANTHER RAG1-ACTIVATING PROTEIN 1 4 260 - -
Vra5g0638 264 PANTHER BIDIRECTIONAL SUGAR TRANSPORTER SWEET 4 260 - -
Vra5g0638 264 Gene3D - 11 98 - -
Vra5g0638 264 Gene3D - 128 225 - -
Vra5g0638 264 Pfam Sugar efflux transporter for intercellular exchange 133 217 IPR004316 GO:0016021
Vra5g0638 264 Pfam Sugar efflux transporter for intercellular exchange 11 97 IPR004316 GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0638 Vra-Chr5 9840232 9842393 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0638 1 243 Miscellaneous Gene Families AT5G50790 57.787 2.25e-103 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0638 K15382 - gmx:100810962 452.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0638 5 9840232 9842393 Vra5g0638 5 9840232 9842393 ECH
Vra7g3538 7 54715149 54717044 Vra5g0638 5 9840232 9842393 PCT