Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00297 ATGTCTCACAGTCCTTTAAGTTTCGCCTTTGGAATTCTAGGTAACATTGCCTCCTTCGTGTGCTTCCTGGCACCACTACCAACATTTTATAGAGTTTGTAAGAAGAAATCAACAGAAGGGTTCCAATCGGTTCCATATGTGGCTGCACTCTTCAGTGCAATGCTTTGGATCTTCTATGCCTATGTGAAGACGGGAGAAACGCTTCTTATCACCATCAATGCATTCGGTTGCGTGATAGAGACAATTTACCTTGCCATATTTATCACTTACTGTCCCAAGAAAGCTAGGATATCGACATTGAGGATGATTGTTTTGTTAAATTTTGGGGGATTTTGCACTATTGTAATCCTAACCCACCTTTTAGCAAAAGGAACTGCGGGTCGTGTCAAGTTTCTAGGATGGATTTGCGTAGTCTTTGCTACTAGTGTTTTTGCAGCACCTTTAAGCATTATTAGGGTGGTCATTCGCACTAAAAGCGTTGAGTTCCTTCCTTTTCCTCTTTCACTCCTTCTCCTGATAAGCGCGATTATGTGGCTGTTGTATGGTATTTCTCTGAAAGATATCTATGTCACGCTCCCGAACGTTGTGGGGTTAACATTTGGAGTCATTCAGATTGGACTCTATGCAATGTACAGAAACAACAAGCCCTCGAAGGATCAGAAGCTACCAGAACACAAAGGAGAAATCCAGAATGACGAAAACGTTGCTCCAACAGTGACGGGAGAAAAACAAGAACAAGAAGTGAACTCTCAAGGTGAAGGAGATATAGAGATTGGGGAGAAGAAAAAGGAAGAGAAGCTAGATGAGGAAAATGAGAAAAAGCATGATGATCAAACGGAACTcaacaaaaacactaatgacaacgacaataacaacGTAAAAAGAGAGAAGGAGAATTGCGAAGTTTGA 909 0.4004 MSHSPLSFAFGILGNIASFVCFLAPLPTFYRVCKKKSTEGFQSVPYVAALFSAMLWIFYAYVKTGETLLITINAFGCVIETIYLAIFITYCPKKARISTLRMIVLLNFGGFCTIVILTHLLAKGTAGRVKFLGWICVVFATSVFAAPLSIIRVVIRTKSVEFLPFPLSLLLLISAIMWLLYGISLKDIYVTLPNVVGLTFGVIQIGLYAMYRNNKPSKDQKLPEHKGEIQNDENVAPTVTGEKQEQEVNSQGEGDIEIGEKKKEEKLDEENEKKHDDQTELNKNTNDNDNNNVKREKENCEV 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00297 302 Gene3D - 9 94 - -
Cca03g00297 302 Coils Coil 260 280 - -
Cca03g00297 302 MobiDBLite consensus disorder prediction 217 302 - -
Cca03g00297 302 PANTHER BIDIRECTIONAL SUGAR TRANSPORTER SWEET 5 287 - -
Cca03g00297 302 Gene3D - 128 222 - -
Cca03g00297 302 MobiDBLite consensus disorder prediction 217 231 - -
Cca03g00297 302 PANTHER RAG1-ACTIVATING PROTEIN 1 5 287 - -
Cca03g00297 302 MobiDBLite consensus disorder prediction 233 247 - -
Cca03g00297 302 MobiDBLite consensus disorder prediction 248 302 - -
Cca03g00297 302 Pfam Sugar efflux transporter for intercellular exchange 9 95 IPR004316 GO:0016021
Cca03g00297 302 Pfam Sugar efflux transporter for intercellular exchange 131 215 IPR004316 GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00297 Cca-Chr3 4478153 4480575 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00297 7 280 Miscellaneous Gene Families AT5G50800 52.465 5.43e-97 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00297 K15382 - gmx:100810426 446.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00297 03 4478153 4480575 Cca03g00297 03 4478153 4480575 ECH
Cca09g02379 09 49151482 49154091 Cca03g00297 03 4478153 4480575 PCT