Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0704 ATGATCGATTTTTCTCGCGTTCAGAAGGAGCTTGCTGAATGTAGCAAAGACACTGAAGGATCAGGAATCAGAGTTACTCCCAAAACCGATAACCTCGTTCGTCTCAATGGCACCATTCCTGGTCCTCTTGGTACTCCCTATGAAGGGGGAATTTTCCAAATTGACATCACTATTCCAGATGGGTACCCATTTGAACCACCTAAGATGCAGTTTGCAACCAAAGTTTGGCACCCTAATATCAGTAGCCAAAGTGGAGCTATTTGCCTGGACATCTTGAAAGATCAGTGGAGCCCTGCACTCACTCTGAAGACTGCACTTCTTTCTGTTCAAGCACTTCTCTCTGCTCCCCAGCCTGATGATCCTCAAGATGCTGTTGTGGCACAGCAGCACAATATACAGAAGAATTTATTGCTTTCAAGGGTGAGCCTTGGCACAACAGTAAGGTTGTTGTCTTGTGACTCGAAGTTCACAAGTTCAAATCTTAGAAACAACCTTCCTGCTTGCGGAGGGTATCTGAAAGAGTATCAGACATTTGTTAGCACTGCTCGTTACTGGACGGAAAGTTTTGCAAAGACATCTTCTCGTGGGGTTGAAGATAAGGTACAGAAACTTGTAGAGATGGGGTTCCCTGAAGCTCAAGTAAGGAGCACTTTGGAAGCTGTTGGCGGTGACGAAAACTTGGCTCTTGAAAGGCTGCTGTAA 702 0.4544 MIDFSRVQKELAECSKDTEGSGIRVTPKTDNLVRLNGTIPGPLGTPYEGGIFQIDITIPDGYPFEPPKMQFATKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPQPDDPQDAVVAQQHNIQKNLLLSRVSLGTTVRLLSCDSKFTSSNLRNNLPACGGYLKEYQTFVSTARYWTESFAKTSSRGVEDKVQKLVEMGFPEAQVRSTLEAVGGDENLALERLL 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0704 233 Pfam UBA/TS-N domain 198 232 IPR015940 -
Lal21g0704 233 SUPERFAMILY UBC-like 6 133 IPR016135 -
Lal21g0704 233 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 198 233 IPR015940 -
Lal21g0704 233 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 2 156 IPR000608 -
Lal21g0704 233 SUPERFAMILY UBA-like 172 233 IPR009060 GO:0005515
Lal21g0704 233 Gene3D Ubiquitin Conjugating Enzyme 2 193 IPR016135 -
Lal21g0704 233 SMART ubc_7 5 191 - -
Lal21g0704 233 CDD UBCc 5 129 IPR000608 -
Lal21g0704 233 Gene3D - 197 233 - -
Lal21g0704 233 CDD UBA_II_E2_UBC27_like 198 233 IPR041974 -
Lal21g0704 233 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 76 92 IPR023313 -
Lal21g0704 233 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 171 228 - -
Lal21g0704 233 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 130 - -
Lal21g0704 233 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 1-RELATED 3 130 - -
Lal21g0704 233 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 1-RELATED 171 228 - -
Lal21g0704 233 Pfam Ubiquitin-conjugating enzyme 6 132 IPR000608 -
Lal21g0704 233 SMART uba_6 197 233 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0704 Lal-Chr21 5626088 5630618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0704 6 113 Miscellaneous Gene Families AT3G17000 29.464 8.40e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0704 K04649 - gmx:100808816 336.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0704 21 5626088 5630618 Lal21g0704 21 5626088 5630618 ECH