Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2412 ATGGCCATTCACCACGAAACTTTGGCTATCTTTTTCGGCATTCTAGGCAACATCATCTCCTTTTTGGTGTTCCTTGCTCCATTACCAACCTTTTACCAAATTTACCGGAAGAGATCTACCCAGGGGTTTCAATCATTACCTTATGTTGTTGCACTGTTCAGTGCAATGCTCTGGATTTATTACGGACTCGTCAAAAATGATGCTAGCCTCCTTCTCATTATCATCAACTCCATTGGATGTGTGGTAGAGACAATTTACCTTGCCATCTTCCTAGTTTACGCCCCAAATAAAGCCATGCTTTCGACCATCATGCTTCTTCTTTTGTTGAATGTGTTTGGGTTCGGAGCGATCGTTCTTTCAACCCTCAAATTTACAACAGGATCCTTACGTCTTTCTGTGATAGGATGGATTTGCCTCGTCCTCAACATAAGCGTATTTGCTGCTCCTCTTTTCATTATGAAACAAGTCATAAAGACGAAAAGCGTGGAATCCATTCCTTTAAGTTTGTCCGTATGTTTGACCATAAATGCTGTTATGTGGTTCTTCTATGGCCTTCTCCTCAAGGACTACTACATCGCTCTCCCAAATACGCTCGGGTTTCTATTCGGCATAATTCAGATGGTACTGTATTTGATTTATAGAAACGCCAAGACACAGGAGCCAATGAAGTTGCAGGAACTAAATGGTCATACTATTGACGTTGTGAAGCTAAGCACAATGGTACCCTCTGAGCCGAATCATGTAACAAAAAGTGGTGCTGTGACTGAGACAGCTAGCAACGTGTGA 786 0.4211 MAIHHETLAIFFGILGNIISFLVFLAPLPTFYQIYRKRSTQGFQSLPYVVALFSAMLWIYYGLVKNDASLLLIIINSIGCVVETIYLAIFLVYAPNKAMLSTIMLLLLLNVFGFGAIVLSTLKFTTGSLRLSVIGWICLVLNISVFAAPLFIMKQVIKTKSVESIPLSLSVCLTINAVMWFFYGLLLKDYYIALPNTLGFLFGIIQMVLYLIYRNAKTQEPMKLQELNGHTIDVVKLSTMVPSEPNHVTKSGAVTETASNV 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2412 261 Pfam Sugar efflux transporter for intercellular exchange 11 97 IPR004316 GO:0016021
Ssu1g2412 261 Pfam Sugar efflux transporter for intercellular exchange 133 217 IPR004316 GO:0016021
Ssu1g2412 261 Gene3D - 130 227 - -
Ssu1g2412 261 PANTHER BIDIRECTIONAL SUGAR TRANSPORTER SWEET 4 257 - -
Ssu1g2412 261 Gene3D - 11 100 - -
Ssu1g2412 261 PANTHER RAG1-ACTIVATING PROTEIN 1 4 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2412 Ssu-Chr1 67320177 67349624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2412 1 258 Miscellaneous Gene Families AT5G50800 53.257 2.69e-92 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2412 K15382 - gmx:100794434 408.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2988 5 76903674 76905964 Ssu1g2412 1 67320177 67349624 PCT