Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4341 ATGGCCATTAGTCATGATTCTTTGGCTTTTACTTTCGGCCTTCTAGGCAATGTCATCTCTTTCATGGTGTTCCTATCTCCAATACCAACTTTTTGCCAAATCTACCGGAGGAAAACTGCGGAAGGGTTTCAATCACTTCCTTATGTGGTTGCACTCTTCAGTTCAATGTTGTGGATTTATTACGCACTCGTCAAAGACAATGCTACCTTTTTTATCATCACCATTAACTCCTTTGGATGTGTGATAGAGTCAGTTTACCTTGCCATTTTCCTATTTTACGCCCCAAGAAACACCAGGTTTTCTACCATCAAGCTTCTTCTCATGCTAAATGTGTTTGGGTTCGGATCCATGCTTCTCTCAACACTCTACCTTACATCAGGATCCAAACGCCTTTCTATTATAGGATGGATTTGCCTGGCTTTCAACATAAGTGTCTTTGCTGCTCCTCTTTGCATTATGAAACGCGTGATAATGACTAGAAGTGTGGAATTCATGCCATTTAGCCTGTCCTTCTTTTTGACCTTAAACGCGGTCATGTGGTTCTTCTATGGTCTTCTCCACAAAGACTTTTACATTGCGCTCCCGAACACGCTTGGGTTTGTATTTGGCATAATTCAGATGGTGATGTATTTGATTTATAGAAACGCCACCCCACCAGTGGAACTAAAAGAAGACCCTGTGATGAAGGTTCAAGAACTTAATGGCCATGTTATTGATGTTATTGACATTGTGAAGCTGAGTAACATGGTGCCCTCCGACCCGACCCATATTGTAGTCCAAAGTGATCCAAATGGAAAACAAGAAACCAAAGGGTAA 816 0.4154 MAISHDSLAFTFGLLGNVISFMVFLSPIPTFCQIYRRKTAEGFQSLPYVVALFSSMLWIYYALVKDNATFFIITINSFGCVIESVYLAIFLFYAPRNTRFSTIKLLLMLNVFGFGSMLLSTLYLTSGSKRLSIIGWICLAFNISVFAAPLCIMKRVIMTRSVEFMPFSLSFFLTLNAVMWFFYGLLHKDFYIALPNTLGFVFGIIQMVMYLIYRNATPPVELKEDPVMKVQELNGHVIDVIDIVKLSNMVPSDPTHIVVQSDPNGKQETKG* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4341 271 Pfam Sugar efflux transporter for intercellular exchange 11 97 IPR004316 GO:0016021
Lja1g4341 271 Pfam Sugar efflux transporter for intercellular exchange 133 216 IPR004316 GO:0016021
Lja1g4341 271 Gene3D - 129 225 - -
Lja1g4341 271 PANTHER BIDIRECTIONAL SUGAR TRANSPORTER SWEET 5 261 - -
Lja1g4341 271 Gene3D - 11 98 - -
Lja1g4341 271 PANTHER RAG1-ACTIVATING PROTEIN 1 5 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4341 Lja-Chr1 56065196 56067527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4341 1 269 Miscellaneous Gene Families AT5G50790 51.301 1.26e-98 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4341 K15382 - gmx:100794434 396.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4341 1 56065196 56067527 Lja1g4341 1 56065196 56067527 ECH
Lja4g0472 4 3859831 3862565 Lja1g4341 1 56065196 56067527 PCT