Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01462 ATGGCCATTAACCATGAAACTTGGGCTTTTGTTTTTGGCCTTCTAGGCAACGTCATCTCCTTCATGGTGTTCCTTGCTCCATTACCAACATTTTACCAAATCTACAAGAAGAAAACTGCAGAAGGATTTCAATCACTGCCATACGTTGTTGCACTGTTCAGCTCAATGCTCTGGATTTATTACGCACTCGTCAAGAAGGATGCTAGCCTCCTTCTTATTACCATTAACTCCTTTGGATGTGTGATTGAGTCAATTTACCTTCTCATCTTCCTAGTTTATGCCCCAAGTAAAACCAGGCTTTCGACCATCAAGCTTCTTCTCTTGTTGAATGTTTTTGGGTTCGGAGCCATGCTTCTTTCAACCCTCTACTTTACAACAGGATCCAAACGTCTTTCTGTTATCGGATGGATTTGCCTAGTTTTCAACATTAGTGTGTTTGCTGCTCCTCTCTGCATTCTGAAACGTGTGATCCAAACCAAGAGCGTGGAATTCATGCCTTTTAGTTTGTCCTTCTTTTTGACCGTAAATGCTGTCATGTGGTTCTTCTATGGCCTTCTTCTCAAGGACTACTACATCGCTCTGCCAAATACGCTTGGATTTGTGTTTGGGATAATTCAGATGGTGCTGTATTTGGTATATAGAAACGCAAAGCCAAAGACATTGGAGGAGCCAACCAAGTTACAGGAACTAAATGGCCATATTGTTGACGTGGTGAAGTTGGGAACAATGACACCCTCAGAGCCGAATCATGTCACAAAAAGTGGTGCTGTGACGGAGACAGCTAGCAACGTGTGA 795 0.4277 MAINHETWAFVFGLLGNVISFMVFLAPLPTFYQIYKKKTAEGFQSLPYVVALFSSMLWIYYALVKKDASLLLITINSFGCVIESIYLLIFLVYAPSKTRLSTIKLLLLLNVFGFGAMLLSTLYFTTGSKRLSVIGWICLVFNISVFAAPLCILKRVIQTKSVEFMPFSLSFFLTVNAVMWFFYGLLLKDYYIALPNTLGFVFGIIQMVLYLVYRNAKPKTLEEPTKLQELNGHIVDVVKLGTMTPSEPNHVTKSGAVTETASNV 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01462 264 FunFam Bidirectional sugar transporter SWEET 10 99 - -
Vimu10g01462 264 PANTHER RAG1-ACTIVATING PROTEIN 1 18 219 IPR047664 -
Vimu10g01462 264 Pfam Sugar efflux transporter for intercellular exchange 11 97 IPR004316 GO:0016020
Vimu10g01462 264 Pfam Sugar efflux transporter for intercellular exchange 133 217 IPR004316 GO:0016020
Vimu10g01462 264 Gene3D - 128 225 - -
Vimu10g01462 264 Gene3D - 11 98 - -
Vimu10g01462 264 FunFam Bidirectional sugar transporter SWEET 130 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01462 Vimu-Chr10 15796910 15798769 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01462 1 243 Miscellaneous Gene Families AT5G50790 57.787 2.25e-103 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01462 K15382 - gmx:100810962 452.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01462 10 15796910 15798769 Vimu10g01462 10 15796910 15798769 ECH
Vimu11g04334 11 64656654 64658273 Vimu10g01462 10 15796910 15798769 PCT