Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1679 ATGAAGAGAAAGAGAGAAGGCGAGGAGGGCATGGATATCGTGTGGCAGACTCCAGCGAATCCCCCGCACCCGCAAGATTACGTCTTTCGAAACGGAATACGATTTGTTAGACCATACTACTTTGAATTCATCGCTCATGTTAAAAATCGGTGGGCGGGAAAAACCATTGTCGATTTATTTGCTGAAGAGTTTAAAGGTCGACCTTATGAGTATTATGTTAGTGCAGTGAAATGTGGAAGGATTCAAGTAGATGGTGAGATGGTACCAGTTTCATACGTAGTTAGACCATCTCAAAAGATAAGCCATTTCTTACACAGGCATGAACCACCTGTGATGGCTTGTGATGTTCTTATTCTTCAAAAAGAACCAGATGTGCTAACTATTTGTAAGCCGGCATCTGTTCCTGTACACCCATGCGGTCAATATCGGAAGAACACCGTTGTTGGCATTCTTCAAGCTGAGCATGGGCTGGCGCCTCTATTTCCTGTTCATCGTCTGGATCGCCTTGTCTCAGGACTTCTTATTTTGGCCAGAAGTGCTGCAAAAGCTGACATCTTTAGGCAACAGATAGAAGCTGGTTTAGTCCACAAACAGTATATAGCAAAAGTAGTTGGAGAATTTCCTGAGGATGAGCTAATTGTCGATGCCAATATTGACTATAATGCACGTGAAGGAAGGAGCACAGCGGAGGTCAGAGACTCTGCAAAGGGGAAGGCTGCTTCTACAAAATTTACTCGGATTAGTACTAATGGAACTCAAAGTATCGTTTTATGTGAACCTATCACTGGCCGTACTCATCAGATACGTGTTCATTTACAGTATTCAGGGCACCCAATAGCCAATGACATGCTGTACATCTCAGAACAAACTGTTGATCGATCTGTCAAAGGGTTGAGTGCTGATAGATCAGCTCGCATATCTGATGTTTCTCTGACACCAAATTTTGATGAAGTGCTCAATGCATGCGAAGCAAATTCCAATGAAGATTTTATCATCGATCCAATGTGTACAAATTGTCCAAATTTGGAACCCAAAGGATATGATGGTAATGAAGAAGGACTATGGCTACATTGTTTTTGTTACTCGGGCCCTGGATGGACGTACGAGTGTCCATATCCTGATTGGGCGAAACTTAGCTAG 1140 0.4298 MKRKREGEEGMDIVWQTPANPPHPQDYVFRNGIRFVRPYYFEFIAHVKNRWAGKTIVDLFAEEFKGRPYEYYVSAVKCGRIQVDGEMVPVSYVVRPSQKISHFLHRHEPPVMACDVLILQKEPDVLTICKPASVPVHPCGQYRKNTVVGILQAEHGLAPLFPVHRLDRLVSGLLILARSAAKADIFRQQIEAGLVHKQYIAKVVGEFPEDELIVDANIDYNAREGRSTAEVRDSAKGKAASTKFTRISTNGTQSIVLCEPITGRTHQIRVHLQYSGHPIANDMLYISEQTVDRSVKGLSADRSARISDVSLTPNFDEVLNACEANSNEDFIIDPMCTNCPNLEPKGYDGNEEGLWLHCFCYSGPGWTYECPYPDWAKLS* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1679 379 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 12 378 - -
Pvu9g1679 379 Pfam RNA pseudouridylate synthase 125 273 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Pvu9g1679 379 ProSitePatterns Rlu family of pseudouridine synthase signature. 163 177 IPR006224 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Pvu9g1679 379 PANTHER PSEUDOURIDINE SYNTHASE 12 378 - -
Pvu9g1679 379 SUPERFAMILY Pseudouridine synthase 108 376 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Pvu9g1679 379 TIGRFAM rluA_subfam: pseudouridine synthase, RluA family 50 294 IPR006225 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Pvu9g1679 379 CDD PseudoU_synth_ScRIB2 101 377 - -
Pvu9g1679 379 Gene3D Pseudouridine synthase 110 330 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1679 K15454 - gmx:100811500 718.768