Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2413 ATGTCCCACAGTTCTTTAACTTTCGTCTTTGGGATTCTAGGTAACATTGCTTCCTTCGTGTGCTTTCTGGCACCACTACCGACATTTTATAGAGTTTGTAAGAAGAAATCAACCGAAGGGTTCCAATCAATTCCATATGTGGCTGCACTCTTCAGTGCAATGCTTTGGATCTTTTATGCCTATGTGAAGACCGGAGAAACACTTCTTATCACCATCAATGGATTCGGTTGCGTGATAGAGACAATTTACCTTGCCATATTTATCACTTACTGCCCCAAGAAAGCTAggATGTCGACACTGAGGAtgattgttttgttaaattttgggGGATTTTGCACGATTGTCCTCCTAACCCACCTACTAGCAAAAGGAGACGGCCGTGTCAAGCTTCTAGGATGGATTTGCGTAGTCTTTGCTACTAGTGTTTTTGCAGCACCTTTAAGCATTATGAGGGTGGTTATTCGCACCAAAAGCGTGGAGTtccttccttttcctctttcaCTCCTCCTCCTGATAAGCGCAATTATGTGGTTGTTATACGGTATTTCTTTGAAGGATATCTATGTTACGCTCCCGAACATTGTGGGGTTAACATTTGGAATCATTCAGATCGGTCTCTATGCAATGTACAGAAACAACAAGCCCGTAAAGGATCAGAAGCTACCAGAACACGAAGGGGATATCGACAATAATGAAAACGTTGCTCCAACAGTGACTGATGACAATCAAGAAGTGAACCCTCAGGCAGGAGATATAGAGATTGGGgagaagaaggaggagaagCAAGATCAACAACCTAAGCATGGCCAAACGgaactcaacaacaacaacgacatCATCAACAACAGCAACATCAACAACATTAGAACCGGGGAGAGGGAGAGTTGCGGAGTTTGA 897 0.3946 MSHSSLTFVFGILGNIASFVCFLAPLPTFYRVCKKKSTEGFQSIPYVAALFSAMLWIFYAYVKTGETLLITINGFGCVIETIYLAIFITYCPKKARMSTLRMIVLLNFGGFCTIVLLTHLLAKGDGRVKLLGWICVVFATSVFAAPLSIMRVVIRTKSVEFLPFPLSLLLLISAIMWLLYGISLKDIYVTLPNIVGLTFGIIQIGLYAMYRNNKPVKDQKLPEHEGDIDNNENVAPTVTDDNQEVNPQAGDIEIGEKKEEKQDQQPKHGQTELNNNNDIINNSNINNIRTGERESCGV 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2413 298 MobiDBLite consensus disorder prediction 251 267 - -
Ssu1g2413 298 Pfam Sugar efflux transporter for intercellular exchange 9 95 IPR004316 GO:0016021
Ssu1g2413 298 Pfam Sugar efflux transporter for intercellular exchange 130 214 IPR004316 GO:0016021
Ssu1g2413 298 PANTHER RAG1-ACTIVATING PROTEIN 1 5 279 - -
Ssu1g2413 298 PANTHER BIDIRECTIONAL SUGAR TRANSPORTER SWEET 5 279 - -
Ssu1g2413 298 MobiDBLite consensus disorder prediction 268 291 - -
Ssu1g2413 298 MobiDBLite consensus disorder prediction 232 246 - -
Ssu1g2413 298 MobiDBLite consensus disorder prediction 218 298 - -
Ssu1g2413 298 Gene3D - 127 221 - -
Ssu1g2413 298 Gene3D - 8 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2413 Ssu-Chr1 67383767 67385486 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2413 2 256 Miscellaneous Gene Families AT5G23660 53.506 4.92e-98 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2413 K15382 - gmx:100810426 445.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2413 1 67383767 67385486 Ssu1g2413 1 67383767 67385486 ECH
Ssu5g2987 5 76872399 76874765 Ssu1g2413 1 67383767 67385486 PCT