Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2084 ATGGCAACTAATGAGAATCTTCCACCAAATGTAATAAAGCAACTTGCCAAGGAGTTGAAAAATCTTGATGAATCCCCTCCAGAAGGCATTAAAGTAGTGGTAAATGATGATGAGTTTTCAATAATATATGCTGACATTTATGGCCCAGCCGGAACTCCTTATGAGAATGGAGTCTTCCGCATGAAGTTGTTACTGTCCCGTGATTATCCGCATTCTCCACCAAAAGGTTTTTTCATGACTAAGATTTTTCATCCAAATATTGCAACCAATGGAGAGATTTGTGTCAACACACTCAAAAAAGATTGGAATCCCAGCCTTGGGTTACGGCATGTTCTTATTGTTGTTAGGTGTCTATTGATCGAACCCTTTCCAGAATCAGCTCTAAATGAGCAGGCTGGCAAGCTGTTGCTTGAAAATTATGAGGAGTATGCTAGACATGCCAGGCTTTACACCGGAATCCATGCGAAGCCGAAACCTAAATTTAAAAGTGGAGCTATATCTGAATCAACAACTGCCCTAAATGTAGATCAGATGAACACCTCAGTGCTTAGTGCTGAAACTAAAACCACACCATCGGGTGCAACACTGCCATCGCCGTCTCCGTTAGCATCCTCAACTGCTGTGACAAGAGGAAACAGCCAGGAACAGGCAGCAGTTGTTTTGACTGAGACAAATGTTCATAGTTCTGCTGCTACAGCTACTGCAGTTTCTGCTGCTCCGGTATCACAAAAGAAGGAAGGTGGACTAGCAAAAGCTCAGGCAGACAAGAAGAAGATGGATGCTAGAAAGAAGAGTTTGAAAAGATTGTAA 810 0.4235 MATNENLPPNVIKQLAKELKNLDESPPEGIKVVVNDDEFSIIYADIYGPAGTPYENGVFRMKLLLSRDYPHSPPKGFFMTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKLLLENYEEYARHARLYTGIHAKPKPKFKSGAISESTTALNVDQMNTSVLSAETKTTPSGATLPSPSPLASSTAVTRGNSQEQAAVVLTETNVHSSAATATAVSAAPVSQKKEGGLAKAQADKKKMDARKKSLKRL* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2084 269 SUPERFAMILY UBC-like 5 160 IPR016135 -
Dod01g2084 269 CDD UBCc 12 151 IPR000608 -
Dod01g2084 269 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 83 98 IPR023313 -
Dod01g2084 269 Coils Coil 249 269 - -
Dod01g2084 269 Gene3D Ubiquitin Conjugating Enzyme 4 157 IPR016135 -
Dod01g2084 269 SMART ubc_7 13 156 - -
Dod01g2084 269 MobiDBLite consensus disorder prediction 187 211 - -
Dod01g2084 269 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 10 156 IPR000608 -
Dod01g2084 269 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 4 263 - -
Dod01g2084 269 Pfam Ubiquitin-conjugating enzyme 15 150 IPR000608 -
Dod01g2084 269 MobiDBLite consensus disorder prediction 233 269 - -
Dod01g2084 269 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 22-LIKE 4 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2084 Dod-Chr1 57287681 57291736 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2084 12 247 Miscellaneous Gene Families AT3G17000 25.714 2.40e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2084 K10583 - qsu:112036284 418.698