Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00555 ATGATAAGATCGAGAAAAAAACACGTGAAACCAAAACCTGATATCCAATTTGCTACCGACGCTCCTCTATcggcggcggcggcggccgtgaacggcggTGCTTCACCTTCTGCCTTCCCCTCATCTCGAAAATCTCTAGGATATGTGAAACTTGTCAAAAGGCACATTGAATCACTGTCCCATTGGTGTATTTCTCACCGGAAGAGAGCAAAAGAAATAGTTGAAACTTGGGATAAATTGTTCAATGCTTCCCAGAAAGAGCAGGGTATCTCTTTTCTATACTTGGCTAATGACATCTTGCAAAATAGTAGGCGAAAGGGTAGTGAGTTTGTCAATGAATTCTGGAAAGTTCTTCCAGTTGCTCTCAGGCATGTTTATGAAAGTGGTGATGAACATGGAAGGAAAGTAGTGAACAGACTAGTTGAAATATGGGAGGATAGGAAGGTTTTTGGTTCACGAGGTCAGGGTCTTAAGGATGAAATAATGGGCAAGAATCCCCTTCCATCTGCAAGCAATGGAAAGAGTTTGAATTCTATCAAGATAGTGAAAAGGGATGCCCACTCAGTGAGAATAAAACTGGCAGTTGGGTGTTTGCCAGAGAAAATACTAACAGCATTTCAGCCTGTTCTTGATGACCATCTTAATGAGGAAGTTGCCTTAAACAATTGCAATGCTGCTTTGCGTGATGTGGTTAAAGTTGTGGAAGATGTTGAAAATACATTGGCTCAAGGAAATCAGTTGGGATCCACTTTGGTGAATGACTTGCATGAGATGGAAAAGAAGCTTAAACAATATATGGAACAACTTGAAAATGCTGAGGCTGCAAGGGCTTCACTGCTTTCCCAGCTTAAACATGCACTTCAGGAACAAGTACAGTTGTTTCTACAAGTTGCCCGAGGCCAGATTGAGAAAGCAGTTGGTCTCAGGAAGCGACTTAACCAAGTAGCAGAAACCACAGATCCATCTCAGCCTACATTTGTTCAATCTTCTATATCATTTTCTCCTTTCCAGACCACTGACGATGATAACAAGAAGGCAGCAGCGGCTGCCGTTGCCGCTAAGCTTGCTGCCTCTGCATCCTCTGCCCAGATGCTTACATCTGTTCTTTCTTCTCTTGTGGCTGAAGAAGCTGCCTCCTTGAATGGTAACTTGAAATCTACAGCATTCTCATCAGGATTGCCTATTTTCAACCCAGAGAAAAGACCCAAGCTTGAAAAACCAACACCTGTCGTAGATGTTAACAGTCCCGATATGGCAAATTCTTCTTTTTATGCAACTATACAACAGCAGCCATCATTAGCAAATGTACCACTTGCACCGTCAGTTGGCATGCAAACTGTGTCACAAGCCAATCAACTACAAGCAGCATTTGCTTCTGCACCCACTCCACCACCTCATTCTCCAGCAAATCAACCACCAAACCAATATGTCCAATTCCAATCAACTGGTTTGATGGCTGGGGGAATTCCTTATGGATATGGGTCAAGTAATCTGCCACCTCCACCACCACCTCCATTGCCTCCACATGTGGCAATGGGGTTATCAATACCCGGCACTCAACCAGCTCAGCAGCAACAGCAGTCATCACCAGGAGGATTTTACAGGCCACCTGGCATAGGGTTTTATGGGCAAAGCAATCCATCAACACCACCGCCAGTACCTAGGCAGTGA 1671 0.4303 MIRSRKKHVKPKPDIQFATDAPLSAAAAAVNGGASPSAFPSSRKSLGYVKLVKRHIESLSHWCISHRKRAKEIVETWDKLFNASQKEQGISFLYLANDILQNSRRKGSEFVNEFWKVLPVALRHVYESGDEHGRKVVNRLVEIWEDRKVFGSRGQGLKDEIMGKNPLPSASNGKSLNSIKIVKRDAHSVRIKLAVGCLPEKILTAFQPVLDDHLNEEVALNNCNAALRDVVKVVEDVENTLAQGNQLGSTLVNDLHEMEKKLKQYMEQLENAEAARASLLSQLKHALQEQVQLFLQVARGQIEKAVGLRKRLNQVAETTDPSQPTFVQSSISFSPFQTTDDDNKKAAAAAVAAKLAASASSAQMLTSVLSSLVAEEAASLNGNLKSTAFSSGLPIFNPEKRPKLEKPTPVVDVNSPDMANSSFYATIQQQPSLANVPLAPSVGMQTVSQANQLQAAFASAPTPPPHSPANQPPNQYVQFQSTGLMAGGIPYGYGSSNLPPPPPPPLPPHVAMGLSIPGTQPAQQQQQSSPGGFYRPPGIGFYGQSNPSTPPPVPRQ 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00555 556 Gene3D - 43 165 IPR008942 -
Cca07g00555 556 Pfam CID domain 53 152 IPR006569 -
Cca07g00555 556 CDD CID_RPRD_like 56 162 - -
Cca07g00555 556 SMART 558neu5 41 162 IPR006569 -
Cca07g00555 556 PANTHER RNA POLYMERASE II-BINDING DOMAIN PROTEIN 52 556 - -
Cca07g00555 556 SUPERFAMILY ENTH/VHS domain 54 149 IPR008942 -
Cca07g00555 556 MobiDBLite consensus disorder prediction 457 476 - -
Cca07g00555 556 ProSiteProfiles CID domain profile. 31 166 IPR006569 -
Cca07g00555 556 MobiDBLite consensus disorder prediction 488 556 - -
Cca07g00555 556 MobiDBLite consensus disorder prediction 495 511 - -
Cca07g00555 556 MobiDBLite consensus disorder prediction 517 532 - -
Cca07g00555 556 Coils Coil 252 289 - -
Cca07g00555 556 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR-RELATED PROTEIN 52 556 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00555 Cca-Chr7 7891734 7917025 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00555 K15559 - gmx:100800067 751.125