Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g2047 ATGGCAACTAACGAGAATCTTCCCCCAAATGTAATAAAGCAACTTGCCAAAGAGCTCAAAAATCTTGATGAATCCCCGCCAGAAGGGATTAAGGTTGTGGTAAATGATGATGATTTTTCAATCATTTATGCCGATATTGATGGTCCAGCTGGAACTCCCTATGAGAATGGAGTTTTCCGCATGAAGTTGTTACTGTCCCATGATTTTCCGCATTCTCCACCTAAAGGTTACTTCATGACCAAGATTTTTCATCCAAATATTGCAACCAATGGAGAGATTTGTGTGAACACGCTTAAAAAAGATTGGAACCCGAGCCTTGGGTTACGCCATGTTCTTATTGTTGTTAGATGTCTATTGATTGAACCCTTTCCAGAATCAGCTCTAAATGAGCAGGCTGGCAAGCTGCTGCTTGAAAATTATGAGGAATATGCTAGACTTGCCAGGCTTTACACTGGAATTCATGCAAAAGCAAAACCCAAATTTAAAAGTGGAGCTATTTCTGAATCGACAACCGCCCTAAATGTTGATCAAACAAACACCTCAGTGCCTAACGCTGAAATAAAAACCGCTCCATCAAGTGCAGCCCTGCCATTGCAGTCTTTATCCTCCTCAACCACCACGACAAGAGGAAACAGTCAAGAACAGGCAGCAGTTGTGGTGACTGAGACTACTGTCAATGGTTCTGCCGCCACCGGTAAGGCAGTTTCTTCTGCTTCAGCACCACTAAAGAGGGAAGGTGGAGTGGCAAAAGCTCAGGCAGACAAGAAGAAGATAGATGCCAGAAAGAAGAGTTTGAAAAGATTGTAA 807 0.4287 MATNENLPPNVIKQLAKELKNLDESPPEGIKVVVNDDDFSIIYADIDGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFMTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKLLLENYEEYARLARLYTGIHAKAKPKFKSGAISESTTALNVDQTNTSVPNAEIKTAPSSAALPLQSLSSSTTTTRGNSQEQAAVVVTETTVNGSAATGKAVSSASAPLKREGGVAKAQADKKKIDARKKSLKRL* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g2047 268 Coils Coil 248 268 - -
Ahy16g2047 268 Pfam Ubiquitin-conjugating enzyme 15 150 IPR000608 -
Ahy16g2047 268 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 4 262 - -
Ahy16g2047 268 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 22-LIKE 4 262 - -
Ahy16g2047 268 CDD UBCc 12 151 IPR000608 -
Ahy16g2047 268 SMART ubc_7 13 156 - -
Ahy16g2047 268 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 10 156 IPR000608 -
Ahy16g2047 268 MobiDBLite consensus disorder prediction 229 268 - -
Ahy16g2047 268 Gene3D Ubiquitin Conjugating Enzyme 4 158 IPR016135 -
Ahy16g2047 268 SUPERFAMILY UBC-like 5 160 IPR016135 -
Ahy16g2047 268 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 83 98 IPR023313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g2047 Ahy-Chr16 113493215 113497040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g2047 12 105 Miscellaneous Gene Families AT2G33770 29.167 7.14e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g2047 K10583 - gmx:100801681 407.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g2047 16 113493215 113497040 Ahy6g1755 6 85218558 85222386 hybridization