Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1970 ATGAGCAACGACATTTTTGACGGACAGATATTAGCTGAGAAGTTGTCGAAACTCAACAACTCACAACAAAGCATTGAATCATTGTCCCGTTGGTGCATTCCTCACCAGACGAGAGCAAAGGATATAGTTGAAATATGGGATAAATGGTTCAATGCATCCCAGAAAGAGCAGCGTGTCTCTTTTTTGAACTTGGCTAACGACATCCTGCAAAATAGTAGGCGGAAAGGTATTGAGTTTGTCAATGAGTTTTGGAAAGTTCTTCCAGCAGCTCTCAGGTGTGTATATGAAAGTGGTGATGTACATGGAAGGAAAGCAGTGAACAGACTTATTGACGTATGGGAGGAGAGAAAGGTTTTTGGGTCGCGAAGTCAGGGTCTTAAAGATGAACTGATGAGTAAGAATCCCCTTCCATGCCCTGTAAGCAATGGAAAAGGTTCAGATTCTATCAAGATAATGAAGAGGGATGCCCACTCAGTGAGAATAAAATTGGCTGTTGGGTGTTTGCCAGAAAAAATACTAACCGCATTTCACTCTGTTCTTGATGAACATCTTAATGAGGAAGCTGCCTTGAATAAGTGTAATGCTGGTGTACACGACATGGTTAAACTCTTGGATGATGTTGAAAATACACTGGCTCAAGGGAGCCAGCCAGGATCCACTTTGGCGAATGAATTACGAGAGCGGGAAAAGGAGCTTAAGCAATATATGGAGCAACTCGAAAATGCAGAGGCTGCTAGAGATTCTTTGCTTTCTCAGCTTAAAGATGCACTGCATGAACAAGAGTCAAAGCAAGAGCTTGTTCGTGCTCAGTTGCTAGTTGTACGAGGCCAGATTGAGAAAACAACTGGTATCAGGAAGTGGCTTAACCAAACAACAGAGGCTACACATCCATCAGTTCAACTAAACAGCACCACTTCTGAACCTACTTTTGCACAACCTTCCATGTCATTTTCTCCTTTCCAAACTCCTGAAGAAGATAACAAGAAGGCGGCAGCAGCTGTTGCTGCTAAGCTTGCCGCCTCTTCATCATCTGCTCAGATGCTTGCATCTGTTCTTTCTTCTCTGGTGGCTGAAGAAGCGGCCTCCGTTAATGGTAGTTTCAATTCCAAGGGATTTACATCAGGATTACCTATGTTCAACCCAGAGAAAAGACCCAAAATTGAAAAATTACCGCCGGTTTCTGATGTTAATATTTCTGATATGGCGAGCTCTTCCTTTTTCACCAATTTGCAACAGCCATTGTCAACAAATCCGCAGCATCCACCGTCAGCCAACATGCAAACCATGTCTCAAGCCAATCAATTACATACTGCATTTGTTTCAGCACCGCTTCCCCCTCAGTATGTCCAACCAACTAGTTTCATGGATGGAGGAATTCCTTACGGATACATGTCAAATAATCTACCACCTCCACCTCCACCTCCTTTTCCTCCACATGCTGCATCAGGGTTATCAATGCCCAGCACTCAACCAGTACAGCAGTCATCGCCAGGAGGATTTTACAGGCCACACGGCATTGGATTTTATGGGCAAACCCACCCGTCAACCCCACCACCAGTTCATAGGCATTGA 1572 0.4415 MSNDIFDGQILAEKLSKLNNSQQSIESLSRWCIPHQTRAKDIVEIWDKWFNASQKEQRVSFLNLANDILQNSRRKGIEFVNEFWKVLPAALRCVYESGDVHGRKAVNRLIDVWEERKVFGSRSQGLKDELMSKNPLPCPVSNGKGSDSIKIMKRDAHSVRIKLAVGCLPEKILTAFHSVLDEHLNEEAALNKCNAGVHDMVKLLDDVENTLAQGSQPGSTLANELREREKELKQYMEQLENAEAARDSLLSQLKDALHEQESKQELVRAQLLVVRGQIEKTTGIRKWLNQTTEATHPSVQLNSTTSEPTFAQPSMSFSPFQTPEEDNKKAAAAVAAKLAASSSSAQMLASVLSSLVAEEAASVNGSFNSKGFTSGLPMFNPEKRPKIEKLPPVSDVNISDMASSSFFTNLQQPLSTNPQHPPSANMQTMSQANQLHTAFVSAPLPPQYVQPTSFMDGGIPYGYMSNNLPPPPPPPFPPHAASGLSMPSTQPVQQSSPGGFYRPHGIGFYGQTHPSTPPPVHRH* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1970 523 Gene3D - 4 134 IPR008942 -
Psa3g1970 523 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR-RELATED PROTEIN 1 520 - -
Psa3g1970 523 Coils Coil 218 270 - -
Psa3g1970 523 SMART 558neu5 10 131 IPR006569 -
Psa3g1970 523 SUPERFAMILY ENTH/VHS domain 10 119 IPR008942 -
Psa3g1970 523 CDD CID_RPRD_like 9 131 - -
Psa3g1970 523 Pfam CID domain 10 121 IPR006569 -
Psa3g1970 523 ProSiteProfiles CID domain profile. 3 135 IPR006569 -
Psa3g1970 523 PANTHER RNA POLYMERASE II-BINDING DOMAIN PROTEIN 1 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1970 Psa-Chr3 175513551 175536512 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1970 K15559 - gmx:100814308 661.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1970 3 175513551 175536512 Psa3g1970 3 175513551 175536512 ECH