Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1497 ATGAGCAACGACATATTTGATGGACAAGTATTAGCAGAGAAGTTGTTGAAACTCAACAATTCACAACAAAGCATTGAATCACTGTCTCGTTGGTGTATTTCTCACCGGAAGAGAGCAAAAGAAATAATCGAAACATGGGATAAATTGTTCAACGCATCCCAGAAAGATCTGCGTGTCTCTTTTCTATACTTGGCTAATGACATCTTGCAAAATAGTAGGCGAAAGGGTAGTGAGTTCGTCAATGAATTCTGGAAAGTTCTTCCAGTGGCTCTCAAGTGTGTTTATGAAGGTGGTGATGAACAGGGGAAGAAAGCTGTGACCAGACTTGTTGACATATGGGAGGAGAGGAAGGTTTTTGGTTCCCGAGCTCAGGGTCTTAAGGATGAAATATTGGGTAAGAATCCCCTCCTTCCATCCTCTGCAAGCAATGGAAAGAGTTCAAATTCTATAAAGATAGTGAAGAGGGATGCCCACTCAGTGAGAATAAAACTGGCTGTTGGGTGTTTGCCAGAAAAAATACTAACTGCATTTCAGTCGGTTTTTGATGGACATCTCGATGAGGAAGCTGCCTTAAACAAGTGTAATGATGCTGTACATGGTGTGGGTAAACTTGTGGAAGATGTTGAAAATACATTGGCTCAAGGAAACCAGCTCGGATCCACTTTGGTCAATGACTTGCAAGAGCAGGAAAAAGAGCTTAAGAATTATATGGAGCAACTTGAAAATGCTGGGGCTGCAAGGGCCTCTTTGCTTTCTCAGCTTAAAGACGCACTGCAGGAACAAGAATCAAGGCAAGAGCATGTTCACGCCCAGTTACAGGTTGTACGAGACCAGATTGAGAAAGCAGCTGGTATCAAGAAGCGGCTTAATCAAGCAGCTGAAGCCACATTTCCTTCAGTTCAACAAAACAGCACCACTTCTCAGCCTACTTTTACCCAACCTTCTATGTCATTTGCTCCTTCTAGGGCTTCTGATGATGATAACAAGAAGGCAGCAGCAGCTGCTATGGCTGCTAAGCTTGCTGCCTCTGCATCCTCTGCCCAGATGCTTACATCAGTTCTTTCTTCTCTAGTAGCTGAAGAAGCTGCCTCAATGAAGGGTAGCTTAAACTCTACTGGATTCACATCAGGGTTACCTGCTTTCAACCAAGATAAAAGACAAAAACTTGAAAAGCCAGCGCCTGTTTCTGATGTTAACAACAGTTCTGACATGGCTAACTCGTCCTTCTATGCCAACTTACAACAACCATCAACCAACATGCAGAACATGTCTCAAGCCAATCACTTGCAAGCTGCATTTACTTCAGCACCCCCTCCCATGCCTCATTCTTCCGCAAATCAACCATATGGCCAATCAACTGGTATGATGGCTGGGGGAATTCCTTATGGATACGGATCGAATAGCTTACCACCTCCGCCTCCTCTGCCTCCACATGTGGCAATGGGGATGTCTATGCCGAGTCCTCAGCCAGCACAGCCGCAACAGCAGTCACCGCCAGGATTTTACAGGCCATCTGGCATGGGGTTTTATGGGCAAAGTCACCCATCAACACCACCCCCAGTATCTAGACAGTGA 1575 0.4508 MSNDIFDGQVLAEKLLKLNNSQQSIESLSRWCISHRKRAKEIIETWDKLFNASQKDLRVSFLYLANDILQNSRRKGSEFVNEFWKVLPVALKCVYEGGDEQGKKAVTRLVDIWEERKVFGSRAQGLKDEILGKNPLLPSSASNGKSSNSIKIVKRDAHSVRIKLAVGCLPEKILTAFQSVFDGHLDEEAALNKCNDAVHGVGKLVEDVENTLAQGNQLGSTLVNDLQEQEKELKNYMEQLENAGAARASLLSQLKDALQEQESRQEHVHAQLQVVRDQIEKAAGIKKRLNQAAEATFPSVQQNSTTSQPTFTQPSMSFAPSRASDDDNKKAAAAAMAAKLAASASSAQMLTSVLSSLVAEEAASMKGSLNSTGFTSGLPAFNQDKRQKLEKPAPVSDVNNSSDMANSSFYANLQQPSTNMQNMSQANHLQAAFTSAPPPMPHSSANQPYGQSTGMMAGGIPYGYGSNSLPPPPPLPPHVAMGMSMPSPQPAQPQQQSPPGFYRPSGMGFYGQSHPSTPPPVSRQ* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1497 524 PANTHER RNA POLYMERASE II-BINDING DOMAIN PROTEIN 1 524 - -
Lja1g1497 524 MobiDBLite consensus disorder prediction 433 453 - -
Lja1g1497 524 MobiDBLite consensus disorder prediction 466 524 - -
Lja1g1497 524 CDD CID_RPRD_like 9 131 - -
Lja1g1497 524 Gene3D - 4 131 IPR008942 -
Lja1g1497 524 MobiDBLite consensus disorder prediction 433 454 - -
Lja1g1497 524 Coils Coil 219 271 - -
Lja1g1497 524 MobiDBLite consensus disorder prediction 510 524 - -
Lja1g1497 524 Pfam CID domain 10 121 IPR006569 -
Lja1g1497 524 MobiDBLite consensus disorder prediction 466 483 - -
Lja1g1497 524 MobiDBLite consensus disorder prediction 296 325 - -
Lja1g1497 524 SUPERFAMILY ENTH/VHS domain 17 119 IPR008942 -
Lja1g1497 524 ProSiteProfiles CID domain profile. 3 135 IPR006569 -
Lja1g1497 524 SMART 558neu5 10 131 IPR006569 -
Lja1g1497 524 MobiDBLite consensus disorder prediction 296 322 - -
Lja1g1497 524 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR-RELATED PROTEIN 1 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1497 Lja-Chr1 16139486 16155553 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1497 K15559 - gmx:100800067 697.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1497 1 16139486 16155553 Lja1g1497 1 16139486 16155553 ECH