Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02117 ATGAGCAACGACATTTTTGACGGACAGATATTAGCCGAGAAGTTGTCGAAACTCAACAATTCACAACAAAGCATTGAATCACTGTCCCGTTGGTGCATTCCTCACCAGAAGAGAGCAAAGGATATAGTTGAAATATGGGACAAATTGTTCAATGCATCCCAGAAAGAGCAACGTGTCTCTTTTTTGAACTTGGCTAATGACATCCTGCAAAATAGTAAGCGGAAAGGTAGTGAGTTTGTCAATGAGTTTTGGAAAGTTCTTCCAGCAACTCTCAGGTGTGTATATGAAAGTGGTGATGTACATGGAAGGAAAGCAGTGAACAGACTTATTGACGTATGGGAGGAGAGAAAGGTTTTTGGGACGCGAAGTCAGGGTCTTAAGGATGAACTGATGAGTAAGAATCCCCTTCCATGCTCTGCAAGCAATGGAAAAGGTTCAGATTCTATCAAGATAGTGAAGAGGGATGCCCACTCAGTGAGAATAAAATTGGCTGTTGGGTGTTTGCCAGAAAAAATACTAACAGCATTTCATTCTGTTCTCGATGAACATCTTAATGAGGAAGCTGCCTTGAATAAGTGTAATGCTGGTGTACACGACATGGTTAAACTCTTGGAAGATGTTGAAAATACGCTGGCTCAAGGGAGCCAGCCAGGATCCACTTTGGCGAATGAGTTACAAGAGCGGGAAAAGGAGCTTAAGCAATATATGGAGCAGCTTGAAAATGCAGAGGCTGCTAGGGATTCTTTGCTTTCTCAGCTTAAAGATGCACTGCATGAACAAGAATCAAAGCAAGAGCTTGTTCGCGCTCAGTTGCTAGTGGTACGAGGCCAGATTGAAAAAACAACTGGTATCAGGAAGTGGCTTAACCAAACAACAGAGGCAGCACATCCATCAGCTCAACTAAACAGCACCACTTCTGATCATACTTTTGCACAACCTTCCATGTCATTTCCTCCTTTCCAAACTTCTGAAGAAGATAACAAGAAGGCGGCAGCAGCTGTTGCTGCTAAGCTTGCCGCCTCCTCCTCATCTGCTCAGATGCTTGCATCTGTTCTTTCTTCTCTAGTGGCTGAAGAAGCAGCCTCCAATAACGGTAGTTTCAATTCCAAAGGATTTACATCAGGATTACCTATGTTCAACCCAGAGAAAAGACCCAAAATTGAAAAATTATCGCCTGTTTCTGATGTTAACAATTCTGATATGGCGAGCTCTTCCTTTTTCACCAATATGCAACAGCGATTGTCAACAAATCCGCAGCATGGACCGTCAGCCAACTTGCAAACCATGTCTCAAGCCAATCAATTACAAGCTGCATTTGTTTCAGCACCCCTTCCCCCTCAGTATGTCCAACCAACTAGTTTCATGGATGGAGGAATTCCTTACGGATACATGTCAAATAATCTACCACCTCCACCTCCTTTTCCTCCACATGCTGCATCAGGGTTATCAATGCCCAGCACTCAACCAGCACATCAGTCACCGCCAGGAGGATTTTACAGGCCACACGGCATTGGATTTTATGGGCAAACCCACCCGTCAACCCCACCACCAGTTCATAGGCATTGA 1566 0.4413 MSNDIFDGQILAEKLSKLNNSQQSIESLSRWCIPHQKRAKDIVEIWDKLFNASQKEQRVSFLNLANDILQNSKRKGSEFVNEFWKVLPATLRCVYESGDVHGRKAVNRLIDVWEERKVFGTRSQGLKDELMSKNPLPCSASNGKGSDSIKIVKRDAHSVRIKLAVGCLPEKILTAFHSVLDEHLNEEAALNKCNAGVHDMVKLLEDVENTLAQGSQPGSTLANELQEREKELKQYMEQLENAEAARDSLLSQLKDALHEQESKQELVRAQLLVVRGQIEKTTGIRKWLNQTTEAAHPSAQLNSTTSDHTFAQPSMSFPPFQTSEEDNKKAAAAVAAKLAASSSSAQMLASVLSSLVAEEAASNNGSFNSKGFTSGLPMFNPEKRPKIEKLSPVSDVNNSDMASSSFFTNMQQRLSTNPQHGPSANLQTMSQANQLQAAFVSAPLPPQYVQPTSFMDGGIPYGYMSNNLPPPPPFPPHAASGLSMPSTQPAHQSPPGGFYRPHGIGFYGQTHPSTPPPVHRH 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02117 521 ProSiteProfiles CID domain profile. 3 135 IPR006569 -
Vifa5g02117 521 SMART 558neu5 10 132 IPR006569 -
Vifa5g02117 521 FunFam ENTH/VHS family protein isoform 1 3 131 - -
Vifa5g02117 521 Coils Coil 218 270 - -
Vifa5g02117 521 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR-RELATED PROTEIN 7 516 - -
Vifa5g02117 521 Gene3D - 4 134 IPR008942 -
Vifa5g02117 521 SUPERFAMILY ENTH/VHS domain 10 119 IPR008942 -
Vifa5g02117 521 Pfam CID domain 10 121 IPR006569 -
Vifa5g02117 521 CDD CID_RPRD_like 9 131 - -
Vifa5g02117 521 MobiDBLite consensus disorder prediction 470 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02117 Vifa-Chr5 701699788 701727859 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02117 K15559 - gmx:100814308 664.84