Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0773 ATGCCTGCTCGTGCCACACAATGCTTGCCTAAATTAGAGCGGGCATGGACATGCCCATTTTTAAATAGGACATGCAATATCATGGCATGCCCACCCGAAATATGGGCTACTAATGAGAATCTTCCACCAAATGTAATAAAGCAACTTGCAAAGGAGTTGAAAAATCTTGATCAATCCCCTCCAGAGGGCATTAAGGTTGTGGTAAATGACGATGATTTTTCTACAATATTTGCTGACATCGATGCTGGGACTCCTTACGAGAATGGAATTTTCCGCATGAAGTTGTTACTGTCTCATGATTTTCCACATTCCCCACCTAAAGGTTTTTTCCTAACAAAGATTTTCCATCCAAATATTGCAACCAATGGAGAGATTTGTGTCAACACACTTAAAAAGGATTGGAATCCTAGCCTTGGGTTACGGCATGTTCTTATTGTTGTTAGGTGTCTATTGATTGAGCCATTTCCAGAGTCAGCTCTAAATGAGCAGGCTGGGAAGTTGCTGCTTGAAGACTATGACGGGTATGCTAGACATGCCAGGCTTTATACCGGAATCCATGCAAAACCAAAGCCCAAATTTAAGAGCCGAGCTATATCTGAATCAACAACTGCTCTGAATGTTGGTCATACAAACACCTCAGTGCTTAGTAATGAAATAAAAGCTGCACCACCCGGTGCTGCATTGCAGTCCTCATTAGCCCCCTCTACCACAGTAACAAGAGGAAATGATCAGGAACGTACACTTCCAACCGAAACAATTGTCGATGTTTCTGCTACTATAGTAAATTCTGCTGCTGCATCACAGAAAAAGGAAGGTGGACAAGCAAAAGCTCAGCCAGACAAGAAGAAGATAGATGCTAGAAAGAAAAGTTTGAAAAGATTGTAA 885 0.4181 MPARATQCLPKLERAWTCPFLNRTCNIMACPPEIWATNENLPPNVIKQLAKELKNLDQSPPEGIKVVVNDDDFSTIFADIDAGTPYENGIFRMKLLLSHDFPHSPPKGFFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKLLLEDYDGYARHARLYTGIHAKPKPKFKSRAISESTTALNVGHTNTSVLSNEIKAAPPGAALQSSLAPSTTVTRGNDQERTLPTETIVDVSATIVNSAAASQKKEGGQAKAQPDKKKIDARKKSLKRL 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0773 294 MobiDBLite consensus disorder prediction 229 245 - -
Lal25g0773 294 CDD UBCc 46 183 IPR000608 -
Lal25g0773 294 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 115 130 IPR023313 -
Lal25g0773 294 Pfam Ubiquitin-conjugating enzyme 49 182 IPR000608 -
Lal25g0773 294 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 44 188 IPR000608 -
Lal25g0773 294 SMART ubc_7 47 188 - -
Lal25g0773 294 MobiDBLite consensus disorder prediction 265 294 - -
Lal25g0773 294 Gene3D Ubiquitin Conjugating Enzyme 37 189 IPR016135 -
Lal25g0773 294 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 29 288 - -
Lal25g0773 294 PANTHER - 29 288 - -
Lal25g0773 294 SUPERFAMILY UBC-like 36 192 IPR016135 -
Lal25g0773 294 MobiDBLite consensus disorder prediction 225 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0773 Lal-Chr25 6635093 6639753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0773 46 137 Miscellaneous Gene Families AT2G33770 28.125 2.09e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0773 K10583 - gmx:100801681 417.927