Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1677 ATGAGCAACGACATATTTGATGGACAGATATTAACGGAGAAGTTGTTGAAactcaacaattcacaacaaaGCATTGAATCACTGTCCCATTGGTGTATTTCTCTCCGGaagaaagcaaaagaaataGTTGAAACTTGGGATAAATTGTTCAATGCTTCCCAGAAAGAGCAGCGTGTCTCTTTTCTATACTTGGCTAATGACATCTTGCAAAATAGTAGGCGAAAGGGGAGCGAGTTTGTCAATGAATTCTGGAAAGTTCTTCCAGCCGCTCTCAGGCATGTTTATGAAAGTGGTGATGAACATGGAAGGAAAGTAGTGGCCAGACTAGTTGACATATGGGAGGAGAGGAAGGTTTTTGGTTCACGAGGTCAGGGTCTTAAGGATGAAATAATGGGCAAGAATCCCTTCCATCTGCAAGCAATGGAAGGAGTTCAAATTCTATCAAGATACTGA 453 0.3885 MSNDIFDGQILTEKLLKLNNSQQSIESLSHWCISLRKKAKEIVETWDKLFNASQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPAALRHVYESGDEHGRKVVARLVDIWEERKVFGSRGQGLKDEIMGKNPFHLQAMEGVQILSRY 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1677 150 Gene3D - 5 135 IPR008942 -
Ssu4g1677 150 ProSiteProfiles CID domain profile. 3 135 IPR006569 -
Ssu4g1677 150 CDD CID_RPRD_like 9 131 - -
Ssu4g1677 150 Pfam CID domain 10 121 IPR006569 -
Ssu4g1677 150 PANTHER OS01G0925000 PROTEIN 5 135 - -
Ssu4g1677 150 SMART 558neu5 10 131 IPR006569 -
Ssu4g1677 150 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR-RELATED PROTEIN 5 135 - -
Ssu4g1677 150 SUPERFAMILY ENTH/VHS domain 17 119 IPR008942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1677 Ssu-Chr4 29395253 29406625 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1677 K15559 - gmx:100800067 258.07