Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03302 GCCACTAATGAAAATCTTCCACCAAATGTTATAAAGCAACTTGCCAAGGAATTGAAAAATCTCGATGAGTCCCCTCCCGATGGTATTAAAGTTGTAGTAAACGATGATGATTTTTCAACTATATTTGCTGACATTGAAGGCCCGGCTGGAACTCCTTATGAGAATGGTGTTTTCCGCATGAAGCTTTTGCTGTCTCATGATTTTCCTCATTCTCCACCAAAAGGTTTTTTCTTGACTAAGATTTTCCATCCGAACATTGCAACCAATGGAGAGATTTGTGTCAACACACTTAAAAAGGATTGGAATCCTAGCAATGGGTTACGTCATGTTCTTATTGTTGTTAGGTGTCTATTGATTGAACCATATCCAGAATCAGCCCTAAATGAACAGGCTGGTAAAATGCTGCTTGAAAATTATGACGAGTATGCTAGACATGCTAGGCTTTACACTGGAATCCATGCAAAACCAAAGCCCAAATTCAAGAGTGGAGCTATCTCTGAATCAACTACTGCTCTGAATGTTGATCAGACAAACACCTCTGTACTTGGTGATGACGTTAAAACCACTTCAGCGAGTGCTGCATTGCCACTGCCAGTACCTGCTGCAACAAGAGGAAATAGTCAGGAACAGGCTGCCACCTCTGTGATTACTTCTGCTACAGTGATTTCTACTGCTTCTGCACCTCAGAAGAAGGAAGCAAAAGCTCTGGTGGACAAGAAGAAGATAGATGCCAGAAAGAAAAGTTTGAAAAGATTGTAA 759 0.4097 ATNENLPPNVIKQLAKELKNLDESPPDGIKVVVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGFFLTKIFHPNIATNGEICVNTLKKDWNPSNGLRHVLIVVRCLLIEPYPESALNEQAGKMLLENYDEYARHARLYTGIHAKPKPKFKSGAISESTTALNVDQTNTSVLGDDVKTTSASAALPLPVPAATRGNSQEQAATSVITSATVISTASAPQKKEAKALVDKKKIDARKKSLKRL 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03302 252 FunFam Ubiquitin-conjugating enzyme E2 22 3 156 - -
Vimu6g03302 252 Pfam Ubiquitin-conjugating enzyme 14 149 IPR000608 -
Vimu6g03302 252 Gene3D Ubiquitin Conjugating Enzyme 3 156 IPR016135 -
Vimu6g03302 252 CDD UBCc 11 150 IPR000608 -
Vimu6g03302 252 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 9 155 IPR000608 -
Vimu6g03302 252 SUPERFAMILY UBC-like 4 159 IPR016135 -
Vimu6g03302 252 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 12 153 - -
Vimu6g03302 252 SMART ubc_7 12 155 - -
Vimu6g03302 252 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 82 97 IPR023313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03302 Vimu-Chr6 29542124 29544047 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03302 11 118 Miscellaneous Gene Families AT3G17000 28.947 2.84e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03302 K10583 - gmx:100801681 433.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03302 6 29542124 29544047 Vimu6g03302 6 29542124 29544047 ECH