Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1065 ATGGCCACTAATGAAAATCTTCCACCAAATGTTATAAAGCAACTTGCCAAGGAGTTGAAAAATCTCGATGAGTCCCCTCCCGAGGGCATTAAAGTTGTTGTAAATGATGATGACTTTTCAACTATATTTGCTGACATTGAAGGCCCGGCTGGAACTCCTTATGAGAATGGAGTTTTCCGCATGAAGCTGTTGCTATCTCATGATTTTCCTCATTCGCCACCAAAAGGTTTTTTCTTGACTAAGATTTTCCATCCGAACATTGCAACCAACGGAGAGATTTGTGTCAACACACTTAAAAAGGATTGGAATCCTAGCCTTGGGTTACGTCATGTTCTTATTGTTGTTAGGTGTCTATTGATTGAACCATTTCCAGAATCAGCTCTAAATGAACAGGCTGGTAAAATGCTGCTTGAAAATTATGACGAGTATGCTAGACATGCTAGGCTTTACACTGGAATCCATGCAAAACCAAAGCCCAAATTCAAGAGTGGAGCTATCTCCGAATCAACTACTGCTCTGAATGTTGATCAGACAAACACCTCTGTGCTCAGTGCTGACGTTAAAACCACTGCAGCGAGTGCTGCATTGCCAGTACCAGTGCCAGTGCCTGCAACAAGAGGAAATAGTCAGGAACAGGCAGCCACCTCTGTGATTACTTCTGCTACAGTCATTTCTACTGCTTCTGCACCTCAGAAGAAGGAAGCAAAAGCTCTGGTGGACAAGAAGAAGATAGATGCCAGAAAGAAAAGTTTGAAAAGATTGTAA 765 0.4222 MATNENLPPNVIKQLAKELKNLDESPPEGIKVVVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGFFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYDEYARHARLYTGIHAKPKPKFKSGAISESTTALNVDQTNTSVLSADVKTTAASAALPVPVPVPATRGNSQEQAATSVITSATVISTASAPQKKEAKALVDKKKIDARKKSLKRL* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1065 254 SMART ubc_7 13 156 - -
Pvu1g1065 254 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 83 98 IPR023313 -
Pvu1g1065 254 Gene3D Ubiquitin Conjugating Enzyme 4 157 IPR016135 -
Pvu1g1065 254 CDD UBCc 12 151 IPR000608 -
Pvu1g1065 254 Pfam Ubiquitin-conjugating enzyme 15 150 IPR000608 -
Pvu1g1065 254 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 10 156 IPR000608 -
Pvu1g1065 254 SUPERFAMILY UBC-like 5 160 IPR016135 -
Pvu1g1065 254 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 4 247 - -
Pvu1g1065 254 PANTHER - 4 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1065 Pvu-Chr1 23638860 23642308 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1065 12 119 Miscellaneous Gene Families AT3G17000 28.070 7.30e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1065 K10583 - gmx:100801681 437.187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1065 1 23638860 23642308 Pvu1g1065 1 23638860 23642308 ECH