Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03300 ATGGCTTCGGATGCTGATATGGAGGACTATGGATTTGAGTACTCAGATGAGGAGCAAGAGGAGCAAGATGTAGATATTGAGAATCAGTATTACAATTCAAAAGGTTTGGTTGAAACTGATCCAGAAGGTGCACTTGCTGGTTTTGCAGAGGTTGTGCGCATGGAACAAGAAAAGGCAGAATGGGGATTTAAAGCTCTAAAGCAAACTGTGAAGCTCTATTATAGACTTGGAAGGTATAAAGAGATGATGGAAGCCTACAGGGAGATGTTGACTTACATTAAGTCAGCAGTGACTCGTAACTATAGTGAAAAATGCATAAACAGCATTATGGACTATGTCTCAGGTTCAGCTAGCCAGAACTTTGGTCTTCTGCAGGAGTTCTACCAGACAACTCTGAAAGCCCTTGAAGAAGCAAAGAATGAGAGATTATGGTTTAAAACAAATCTTAAGCTTTGTAAGATCTTCTTTGATATTGGGGAATATGGACGGATGAGTAAGATCTTGAAAGAACTTCACAAATCTTGTCAAAGGGAAGATGGCACGGATGACCATAAGAAAGGAACCCAACTTTTGGAGGTTTATGCAATAGAAATTCAAATGTACACAGAGACCAAGAACAACAAAAAACTCAAGCAACTTTACCAGAAAGCACTCACTATTAAGTCAGCAATTCCCCATCCGCGGATAATGGGAATAATCCATGAATGTGGGGGGAAAATGCATATGGCAGAGCGACAGTGGGCTGAAGCAGCTACGGATTTTTTTGAAGCTTTTAAGAATTATGATGAAGCTGGGAATCAGAGGCGTATCCAATGCTTGAAATACCTTGTTCTTGCCAACATGTTGATGGAGTCTGAAGTAAACCCTTTTGATGGGCAGGAGGCTAAACCATACAAGAATGACCCTGAAATTTTGGCAATGACAAATTTGATAGCAGCATATCAGCGGAATGAAATATTGGAATTTGAGAAAATCTTGAAGAGTAACAGACGAACCATCATGGATGACCCATTTATTAGAAATTACATTGAGGATCTGCTAAAGAATATCAGAACTCAAGTCTTGCTGAAGCTCATCAAACCATATACGAGGATCAGGATCCCGTTTATATCTAAGGAACTTAATGTGCCTGAGAATGATGTCGAGCAGCTACTGGTATCGCTCATCTTGGATAACAGAATTCAAGGACACATTGATCAAGTCAACCGGCTCTTAGAACGCTCGGATAGGTCGAAAGGAATGAAGAAGTATACTGCCGTAGACAAATGGAACACACAACTTAAATCTCTTTATCAAACTATCAGCAACAGAGTTGGTTAA 1320 0.4 MASDADMEDYGFEYSDEEQEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEQEKAEWGFKALKQTVKLYYRLGRYKEMMEAYREMLTYIKSAVTRNYSEKCINSIMDYVSGSASQNFGLLQEFYQTTLKALEEAKNERLWFKTNLKLCKIFFDIGEYGRMSKILKELHKSCQREDGTDDHKKGTQLLEVYAIEIQMYTETKNNKKLKQLYQKALTIKSAIPHPRIMGIIHECGGKMHMAERQWAEAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEILEFEKILKSNRRTIMDDPFIRNYIEDLLKNIRTQVLLKLIKPYTRIRIPFISKELNVPENDVEQLLVSLILDNRIQGHIDQVNRLLERSDRSKGMKKYTAVDKWNTQLKSLYQTISNRVG 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03300 439 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2 6 437 - -
Vimu6g03300 439 SUPERFAMILY "Winged helix" DNA-binding domain 335 411 IPR036390 -
Vimu6g03300 439 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 341 423 IPR000717 -
Vimu6g03300 439 Pfam PCI domain 306 406 IPR000717 -
Vimu6g03300 439 MobiDBLite consensus disorder prediction 1 22 - -
Vimu6g03300 439 FunFam COP9 signalosome complex subunit 2 64 439 - -
Vimu6g03300 439 Gene3D - 64 439 - -
Vimu6g03300 439 ProSiteProfiles PCI domain profile. 243 412 IPR000717 -
Vimu6g03300 439 SMART PCI/PINT associated module 165 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03300 Vimu-Chr6 29522158 29530190 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03300 K12176 - gmx:100788070 852.047