Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02988 ATGGCCACTAATGAAAATCTTCCGCCTAACGTGATCAAGCAACTTGCCAAAGAGTTGAAAAATCTTGATGAAACGCCTCCTGAGGGCATTAAAGTTGTCGTGGATGATGGTGATTTCTCAACGATACATGCTGACATTGATGGCCCAGCTGGGACTCCTTATGAGAATGGAGTTTTCCGCATGAAATTGATACTGTCCCGTGATTTTCCACATTCTCCTCCTAAAGGATATTTCATGACCAAGATTTTCCATCCAAATATTTCAAGCAGTGGTGAGATTTGTGTCAACACACTTAAAAAGGATTGGAATCCTAGCCTTGGGCTACGCCATGTCCTTACTGTTGTTAGGTGTCTATTGATTGAACCATTTCCAGAATCGGCTCTAAATGAGCAGGCTGGTAAACTACTGCTTGAAGATTATGAGCAGTATGCTAGACATGCCAGGCTTTACACCGGAATACATGCAAAACCCAAGCCCAAATTCAAAAGTGGAGCTATAACCGAGTCAACTACTGCTCTGAATGTTGATCAGACAAACACTTCGGTGCTTAATGCTGACAGCAAAACCGTGCCATCAAATGCTGCTCTACCACCATTGTCGATGCCCTCGACCACTGCAGCAAGAGGAGCTAGTCAGGATCTGGCAGTGGGTGTTCTGACCGAGTCATCTGTTAATTGTTCTACTGCTTCCGCTGTAGCTTCTGCTGCTCCTGCACCACAAAAGAAGGAAATTCGAACTGCTAAAGCTCAGGCAGACAAGAAGAAGTTAGATGCTAGAAAGAAAAGTTTGAAAAGATTGTGA 801 0.4395 MATNENLPPNVIKQLAKELKNLDETPPEGIKVVVDDGDFSTIHADIDGPAGTPYENGVFRMKLILSRDFPHSPPKGYFMTKIFHPNISSSGEICVNTLKKDWNPSLGLRHVLTVVRCLLIEPFPESALNEQAGKLLLEDYEQYARHARLYTGIHAKPKPKFKSGAITESTTALNVDQTNTSVLNADSKTVPSNAALPPLSMPSTTAARGASQDLAVGVLTESSVNCSTASAVASAAPAPQKKEIRTAKAQADKKKLDARKKSLKRL 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02988 266 CDD UBCc 12 151 IPR000608 -
Trre13g02988 266 SMART ubc_7 13 156 - -
Trre13g02988 266 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 13 155 - -
Trre13g02988 266 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 83 98 IPR023313 -
Trre13g02988 266 MobiDBLite consensus disorder prediction 230 266 - -
Trre13g02988 266 Coils Coil 246 266 - -
Trre13g02988 266 SUPERFAMILY UBC-like 5 160 IPR016135 -
Trre13g02988 266 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 10 156 IPR000608 -
Trre13g02988 266 FunFam Ubiquitin-conjugating enzyme E2 22 4 157 - -
Trre13g02988 266 Pfam Ubiquitin-conjugating enzyme 15 150 IPR000608 -
Trre13g02988 266 Gene3D Ubiquitin Conjugating Enzyme 4 157 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02988 Trre-Chr13 30352120 30353723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02988 12 105 Miscellaneous Gene Families AT2G33770 30.208 3.87e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02988 K10583 - qsu:112036284 380.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02988 13 30352120 30353723 Trre13g02988 13 30352120 30353723 ECH