Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03303 ATGGGTTGCATCACAACAAAGGAGCTTGGAACTGTCATGCGTTCTTTGGGTCAGAATCCCACTGAGGCAGAGCTCCAAGACATGATCAACGAAGTAGACGCTGATGGCAATGGCACCATTGACTTCCCTGAGTTCTTGAATCTCATGGCCAGAAAGATGAAGGACACTGACTCTGAAGAGGAGCTGAAAGAGGCGTTCCGAGTGTTCGACAAGGACCAGAATGGGTTCATTTCTGCTGCTGAGCTCCGCCACGTGATGACCAACCTTGGGGAGAAGCTCACTGACGAAGAGGTTGATGAGATGATTCGAGAGGCTGACGTTGATGGTGATGGCCAAATAAATTATGAGGAGTTTGTTAAGGTCATGATGGCCAAGTGA 378 0.4894 MGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03303 125 ProSiteProfiles EF-hand calcium-binding domain profile. 20 55 IPR002048 GO:0005509
Vimu6g03303 125 ProSiteProfiles EF-hand calcium-binding domain profile. 57 92 IPR002048 GO:0005509
Vimu6g03303 125 ProSitePatterns EF-hand calcium-binding domain. 70 82 IPR018247 -
Vimu6g03303 125 SMART efh_1 24 52 IPR002048 GO:0005509
Vimu6g03303 125 SMART efh_1 97 125 IPR002048 GO:0005509
Vimu6g03303 125 SMART efh_1 61 89 IPR002048 GO:0005509
Vimu6g03303 125 ProSitePatterns EF-hand calcium-binding domain. 106 118 IPR018247 -
Vimu6g03303 125 Gene3D - 1 51 - -
Vimu6g03303 125 ProSiteProfiles EF-hand calcium-binding domain profile. 93 125 IPR002048 GO:0005509
Vimu6g03303 125 ProSitePatterns EF-hand calcium-binding domain. 33 45 IPR018247 -
Vimu6g03303 125 SUPERFAMILY EF-hand 2 123 IPR011992 -
Vimu6g03303 125 FunFam Calmodulin 55 125 - -
Vimu6g03303 125 Pfam EF-hand domain pair 59 122 IPR002048 GO:0005509
Vimu6g03303 125 FunFam Calmodulin 1 2 51 - -
Vimu6g03303 125 Pfam EF-hand domain pair 2 51 IPR002048 GO:0005509
Vimu6g03303 125 Gene3D - 52 99 - -
Vimu6g03303 125 CDD EFh 2 50 IPR002048 GO:0005509
Vimu6g03303 125 PANTHER CALCIUM BINDING PROTEIN 2 122 - -
Vimu6g03303 125 Gene3D - 100 125 - -
Vimu6g03303 125 CDD EFh 61 123 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03303 Vimu-Chr6 29552661 29553570 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03303 2 54 EF-hand Containing Proteins AT2G27030 41.509 1.68e-07 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03303 K02183 - egt:105958987 248.825