Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1066 ATGGCAGATCAACTCACCGATGACCAGATCTCTGAGTTCAAGGAAGCCTTCAGCTTGTTCGATAAGGATGGCGATGGTTGCATCACAACAAAGGAGCTTGGAACTGTCATGCGTTCTTTGGGTCAGAATCCTACTGAGGCAGAGCTCCAAGACATGATCAACGAAGTAGATGCTGATGGCAATGGCACCATTGACTTCCCTGAGTTCTTGAACCTCATGGCCAGAAAGATGAAGGACACTGACTCTGAGGAGGAGCTGAAAGAGGCGTTCCGAGTGTTCGACAAGGACCAGAATGGGTTCATTTCTGCTGCTGAGCTCCGCCACGTGATGACCAACCTTGGGGAGAAGCTCACTGACGAAGAGGTTGATGAGATGATTCGAGAGGCTGACGTTGATGGTGATGGCCAAATCAATTATGAGGAGTTTGTTAAGGTCATGATGGCCAAGTGA 450 0.4911 MADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1066 149 ProSitePatterns EF-hand calcium-binding domain. 94 106 IPR018247 -
Pvu1g1066 149 Gene3D - 75 123 - -
Pvu1g1066 149 ProSitePatterns EF-hand calcium-binding domain. 21 33 IPR018247 -
Pvu1g1066 149 PANTHER CALMODULIN-2 2 149 - -
Pvu1g1066 149 ProSiteProfiles EF-hand calcium-binding domain profile. 81 116 IPR002048 GO:0005509
Pvu1g1066 149 CDD EFh 12 74 IPR002048 GO:0005509
Pvu1g1066 149 Gene3D - 1 74 - -
Pvu1g1066 149 Pfam EF-hand domain pair 12 73 IPR002048 GO:0005509
Pvu1g1066 149 Pfam EF-hand domain pair 83 146 IPR002048 GO:0005509
Pvu1g1066 149 ProSitePatterns EF-hand calcium-binding domain. 130 142 IPR018247 -
Pvu1g1066 149 ProSiteProfiles EF-hand calcium-binding domain profile. 44 79 IPR002048 GO:0005509
Pvu1g1066 149 PANTHER CALCIUM BINDING PROTEIN 2 149 - -
Pvu1g1066 149 SUPERFAMILY EF-hand 2 147 IPR011992 -
Pvu1g1066 149 Gene3D - 124 149 - -
Pvu1g1066 149 ProSiteProfiles EF-hand calcium-binding domain profile. 8 43 IPR002048 GO:0005509
Pvu1g1066 149 SMART efh_1 121 149 IPR002048 GO:0005509
Pvu1g1066 149 SMART efh_1 12 40 IPR002048 GO:0005509
Pvu1g1066 149 SMART efh_1 48 76 IPR002048 GO:0005509
Pvu1g1066 149 SMART efh_1 85 113 IPR002048 GO:0005509
Pvu1g1066 149 ProSitePatterns EF-hand calcium-binding domain. 57 69 IPR018247 -
Pvu1g1066 149 ProSiteProfiles EF-hand calcium-binding domain profile. 117 149 IPR002048 GO:0005509
Pvu1g1066 149 CDD EFh 85 147 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1066 Pvu-Chr1 23671381 23672973 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1066 1 78 EF-hand Containing Proteins AT2G27030 44.304 3.15e-14 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1066 K02183 - egt:105972378 298.13