Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu9g2588 . . . Aed4g0692 Aev04g1154 Ahy14g1029 Ahy4g0933 Aip04g01120 . Amo14g1446 Amo04g0324 Apr1g2130 Arst4g01378 . . . Car01g00993 Cca08g01695 . Dod03g1304 . . . Gma09g00389 . Gso9g0361 . . . . Lan16g1126 Lan19g0590 Lapu9g00101 Lasa1g01562 . . . . Lja6g2248 Mal4g3668 Mepo6g01459 Mesa5g03168 . Mtr2g1285 Phac9g04135 Phco7g02957 . Psa1g3548 Pste2g03147 Pumo2g01363 Rops11g01534 Seca6g04016 Spst9g03130 Ssu1g1306 . . Trre3g01686 Tsu07g01818 Vian4g00114 Vifa1g09372 Vimu10g00171 Viun9g00144 Vivi4g02730 Vra5g0113
Pvu9g2589 . . Adu04g00963 Aed4g0691 Aev04g1153 Ahy14g1028 Ahy4g0932 Aip04g01119 . Amo14g1445 Amo04g0323 Apr1g2127 Arst4g01377 . . . Car01g00992 Cca08g01696 . Dod03g1303 . . . Gma09g00388 . Gso9g0360 . . . . . Lan19g0619 Lapu9g00100 Lasa1g01561 . . . . Lja6g2249 Mal4g3673 Mepo6g01458 Mesa5g03169 . Mtr2g1284 Phac9g04136 Phco7g02959 . Psa1g3549 . Pumo2g01362 Rops11g01533 Seca6g04017 . Ssu1g1305 . . Trre3g01684 Tsu07g01816 Vian4g00113 Vifa1g09373 Vimu10g00169 Viun9g00140 Vivi4g02731 Vra5g0112
Pvu9g2590 . . Adu04g00962 Aed4g0690 Aev04g1152 Ahy14g1027 Ahy4g0931 Aip04g01117 . . . Apr1g2126 . . . . Car01g00991 Cca08g01698 . Dod03g1302 . . . Gma09g00387 . Gso9g0359 . . . . . Lan19g0618 . . . . . . Lja6g2250 Mal4g3675 . Mesa5g03170 . Mtr2g1282 . . . Psa1g3550 . Pumo2g01360 . . . Ssu1g1304 . . . Tsu07g01814 . Vifa1g09387 . . . Vra5g0111
Pvu9g2591 . . Adu04g00961 Aed4g0688 Aev04g1151 Ahy14g1026 Ahy4g0930 Aip04g01116 . Amo14g1442 Amo04g0322 Apr1g2125 Arst4g01375 . . . Car01g00990 Cca08g01699 . Dod03g1301 . . . Gma09g00386 . Gso9g0357 . . . . . Lan19g0617 Lapu9g00097 Lasa1g01557 . . . . Lja6g2251 Mal4g3676 Mepo6g01455 Mesa5g03172 . Mtr2g1280 . . . . Pste2g03144 Pumo2g01359 Rops11g01531 Seca6g04018 . Ssu1g1303 . . Trre3g01682 Tsu07g01813 Vian4g00112 Vifa1g09388 . Viun9g00138 Vivi4g02744 Vra5g0110
Pvu9g2592 . . . Aed4g0687 Aev04g1150 . . . . . . Apr1g2124 . . . . . Cca08g01701 . Dod03g1300 . . . . . . . . . . . . Lapu9g00096 . . . . . Lja6g2252 . . . . . . Phco7g02961 . . . Pumo2g01358 Rops11g01529 Seca6g04019 . Ssu1g1301 . . . . . . . Viun9g00137 . .
Pvu9g2593 . . . Aed4g0686 . . . . . . . . . . . . . Cca08g01705 . Dod03g1293 . . . Gma09g00382 . . . . . . . . . . . . . . . . . . . . . . . . . . . Seca6g04021 . . . . . . Vian4g00110 . Vimu10g00167 . . .
Pvu9g2594 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Pste2g03143 . . . . Ssu1g1300 . . . . . . . . . .
Pvu9g2595 . . . . . . . . . . . . . . . . . Cca08g01707 . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco7g02963 . . . . . . . . . . . . . . . . . .
Pvu9g2596 . . . Aed4g0683 . . . . . . . . . . . . . Cca08g01708 . . . . . Gma09g00379 . . . . . . . . . . . . . . . . . . . . . Phco7g02964 . . . . Rops11g01525 . . Ssu1g1295 . . . . Vian4g00109 . Vimu10g00165 . . .
Pvu9g2597 . . Adu04g00948 Aed4g0682 Aev04g1144 . . . . . . . . . . . . . . Dod03g1289 . . . Gma09g00378 . . . . . . . . . Lasa1g01553 . . . . . . . . . . . . . . . . . . . Ssu1g1294 . . . . . . Vimu10g00164 . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Pvu Pvu9g2588 Chr9 36352671 36354000 +
Aed Aed4g0692 Chr4 5825086 5825940 -
Aev Aev04g1154 Chr04 7331380 7332306 -
Ahy Ahy14g1029 Chr14 17835009 17836338 -
Ahy Ahy4g0933 Chr4 17378060 17379329 -
Aip Aip04g01120 Chr04 17009608 17010879 -
Amo Amo14g1446 Chr14 24592076 24593349 -
Amo Amo04g0324 Chr04 5705176 5706658 -
Apr Apr1g2130 Chr1 30803906 30805329 -
Arst Arst4g01378 Chr4 16378432 16379615 -
Car Car01g00993 Chr01 9373850 9375240 -
Cca Cca08g01695 Chr08 48717787 48718638 +
Dod Dod03g1304 Chr03 16619979 16621467 -
Gma Gma09g00389 Chr09 3654638 3655889 -
Gso Gso9g0361 Chr9 3550373 3551709 -
Lan Lan16g1126 Chr16 18334676 18351157 -
Lan Lan19g0590 Chr19 11094415 11094972 -
Lapu Lapu9g00101 Chr9 940632 941904 -
Lasa Lasa1g01562 Chr1 137389647 137390540 -
Lja Lja6g2248 Chr6 51422862 51424454 +
Mal Mal4g3668 Chr4 108385185 108386072 +
Mepo Mepo6g01459 Chr6 15896316 15897939 -
Mesa Mesa5g03168 Chr5 57063555 57066710 +
Mtr Mtr2g1285 Chr2 14004685 14006017 -
Phac Phac9g04135 Chr9 39257614 39259018 +
Phco Phco7g02957 Chr7 48396039 48396857 +
Psa Psa1g3548 Chr1 305454415 305456399 +
Pste Pste2g03147 Chr2 31387086 31387949 -
Pumo Pumo2g01363 Chr2 20366008 20367497 -
Rops Rops11g01534 Chr11 23338710 23340034 -
Seca Seca6g04016 Chr6 107817133 107817921 +
Spst Spst9g03130 Chr9 64967159 64968019 +
Ssu Ssu1g1306 Chr1 28898087 28898956 -
Trre Trre3g01686 Chr3 13586309 13587208 -
Tsu Tsu07g01818 Chr07 18095170 18096487 -
Vian Vian4g00114 Chr4 1055202 1056038 -
Vifa Vifa1g09372 Chr1 1480741175 1480742026 +
Vimu Vimu10g00171 Chr10 1020171 1021004 -
Viun Viun9g00144 Chr9 898585 899894 -
Vivi Vivi4g02730 Chr4 130149814 130151149 +
Vra Vra5g0113 Chr5 930612 932056 -
Pvu Pvu9g2589 Chr9 36355648 36360197 -
Adu Adu04g00963 Chr04 16375480 16380334 +
Aed Aed4g0691 Chr4 5817822 5823186 +
Aev Aev04g1153 Chr04 7325488 7329085 +
Ahy Ahy14g1028 Chr14 17828774 17834327 +
Ahy Ahy4g0932 Chr4 17371922 17377321 +
Aip Aip04g01119 Chr04 17003486 17008415 +
Amo Amo14g1445 Chr14 24585857 24590779 +
Amo Amo04g0323 Chr04 5699274 5704145 +
Apr Apr1g2127 Chr1 30790170 30795300 +
Arst Arst4g01377 Chr4 16372307 16377200 +
Car Car01g00992 Chr01 9366429 9372052 +
Cca Cca08g01696 Chr08 48730043 48736305 -
Dod Dod03g1303 Chr03 16612533 16617801 +
Gma Gma09g00388 Chr09 3644839 3650651 +
Gso Gso9g0360 Chr9 3540269 3546729 +
Lan Lan19g0619 Chr19 11593383 11598869 +
Lapu Lapu9g00100 Chr9 931348 938014 +
Lasa Lasa1g01561 Chr1 137349202 137354329 +
Lja Lja6g2249 Chr6 51426787 51433176 -
Mal Mal4g3673 Chr4 108427866 108433098 -
Mepo Mepo6g01458 Chr6 15885973 15891977 +
Mesa Mesa5g03169 Chr5 57068323 57074189 -
Mtr Mtr2g1284 Chr2 13992361 13998968 +
Phac Phac9g04136 Chr9 39260339 39265017 -
Phco Phco7g02959 Chr7 48399050 48403402 -
Psa Psa1g3549 Chr1 305478628 305484183 -
Pumo Pumo2g01362 Chr2 20358022 20364499 +
Rops Rops11g01533 Chr11 23318404 23322763 +
Seca Seca6g04017 Chr6 107821980 107827848 -
Ssu Ssu1g1305 Chr1 28886026 28891662 +
Trre Trre3g01684 Chr3 13571384 13576422 +
Tsu Tsu07g01816 Chr07 18063863 18069545 +
Vian Vian4g00113 Chr4 1046914 1052313 +
Vifa Vifa1g09373 Chr1 1480856145 1480860753 -
Vimu Vimu10g00169 Chr10 1013270 1019082 +
Viun Viun9g00140 Chr9 891946 896643 +
Vivi Vivi4g02731 Chr4 130157848 130164047 -
Vra Vra5g0112 Chr5 922375 928542 +
Pvu Pvu9g2590 Chr9 36362000 36364996 -
Adu Adu04g00962 Chr04 16372739 16375106 +
Aed Aed4g0690 Chr4 5814243 5817478 +
Aev Aev04g1152 Chr04 7321215 7323554 +
Ahy Ahy14g1027 Chr14 17797848 17800180 +
Ahy Ahy4g0931 Chr4 17368957 17371264 +
Aip Aip04g01117 Chr04 16972299 16974663 +
Apr Apr1g2126 Chr1 30787035 30789162 +
Car Car01g00991 Chr01 9361586 9363772 +
Cca Cca08g01698 Chr08 48761554 48764439 -
Dod Dod03g1302 Chr03 16608301 16610863 +
Gma Gma09g00387 Chr09 3632105 3642990 +
Gso Gso9g0359 Chr9 3536749 3539518 +
Lan Lan19g0618 Chr19 11588187 11591296 +
Lja Lja6g2250 Chr6 51435160 51437636 -
Mal Mal4g3675 Chr4 108462506 108464787 -
Mesa Mesa5g03170 Chr5 57079319 57081391 -
Mtr Mtr2g1282 Chr2 13978738 13980397 +
Psa Psa1g3550 Chr1 305556258 305558827 -
Pumo Pumo2g01360 Chr2 20313250 20315476 +
Ssu Ssu1g1304 Chr1 28843840 28870531 +
Tsu Tsu07g01814 Chr07 18044826 18047298 +
Vifa Vifa1g09387 Chr1 1483685345 1483687335 -
Vra Vra5g0111 Chr5 919219 921291 +
Pvu Pvu9g2591 Chr9 36366440 36373786 -
Adu Adu04g00961 Chr04 16366134 16372362 +
Aed Aed4g0688 Chr4 5800118 5808259 +
Aev Aev04g1151 Chr04 7313177 7319482 +
Ahy Ahy14g1026 Chr14 17791221 17797439 +
Ahy Ahy4g0930 Chr4 17362396 17368590 +
Aip Aip04g01116 Chr04 16965658 16971917 +
Amo Amo14g1442 Chr14 24548261 24554569 +
Amo Amo04g0322 Chr04 5689639 5695946 +
Apr Apr1g2125 Chr1 30777122 30784947 +
Arst Arst4g01375 Chr4 16363056 16369225 +
Car Car01g00990 Chr01 9351148 9359074 +
Cca Cca08g01699 Chr08 48773725 48781626 -
Dod Dod03g1301 Chr03 16599449 16606264 +
Gma Gma09g00386 Chr09 3621704 3629558 +
Gso Gso9g0357 Chr9 3519780 3527466 +
Lan Lan19g0617 Chr19 11558739 11566979 +
Lapu Lapu9g00097 Chr9 908096 919000 +
Lasa Lasa1g01557 Chr1 136926529 136931316 +
Lja Lja6g2251 Chr6 51438324 51445852 -
Mal Mal4g3676 Chr4 108466692 108474231 -
Mepo Mepo6g01455 Chr6 15861320 15869310 +
Mesa Mesa5g03172 Chr5 57095468 57102753 -
Mtr Mtr2g1280 Chr2 13961600 13969222 +
Pste Pste2g03144 Chr2 31340459 31354213 +
Pumo Pumo2g01359 Chr2 20270584 20271229 +
Rops Rops11g01531 Chr11 23295839 23309510 +
Seca Seca6g04018 Chr6 107829980 107846351 -
Ssu Ssu1g1303 Chr1 28807503 28808810 +
Trre Trre3g01682 Chr3 13546528 13553472 +
Tsu Tsu07g01813 Chr07 18035676 18041771 +
Vian Vian4g00112 Chr4 1029178 1041945 +
Vifa Vifa1g09388 Chr1 1483824814 1483825472 -
Viun Viun9g00138 Chr9 876242 884539 +
Vivi Vivi4g02744 Chr4 130439415 130445318 -
Vra Vra5g0110 Chr5 909874 917539 +
Pvu Pvu9g2592 Chr9 36376972 36384586 -
Aed Aed4g0687 Chr4 5791359 5797115 +
Aev Aev04g1150 Chr04 7304748 7311644 +
Apr Apr1g2124 Chr1 30767494 30775025 +
Cca Cca08g01701 Chr08 48806284 48813324 -
Dod Dod03g1300 Chr03 16581958 16590503 +
Lapu Lapu9g00096 Chr9 897715 904129 +
Lja Lja6g2252 Chr6 51449408 51455917 -
Phco Phco7g02961 Chr7 48408670 48423778 -
Pumo Pumo2g01358 Chr2 20250753 20261579 +
Rops Rops11g01529 Chr11 23250313 23257480 +
Seca Seca6g04019 Chr6 107853002 107858955 -
Ssu Ssu1g1301 Chr1 28779716 28783023 +
Viun Viun9g00137 Chr9 869763 874533 +
Pvu Pvu9g2593 Chr9 36398769 36399612 +
Aed Aed4g0686 Chr4 5781568 5781858 -
Cca Cca08g01705 Chr08 48904654 48905327 +
Dod Dod03g1293 Chr03 16474678 16475057 -
Gma Gma09g00382 Chr09 3599398 3600043 -
Seca Seca6g04021 Chr6 107883477 107890286 +
Vian Vian4g00110 Chr4 1002655 1005456 -
Vimu Vimu10g00167 Chr10 986062 989607 -
Pvu Pvu9g2594 Chr9 36402053 36402637 +
Pste Pste2g03143 Chr2 31299085 31300054 -
Ssu Ssu1g1300 Chr1 28733845 28734117 -
Pvu Pvu9g2595 Chr9 36411282 36411845 +
Cca Cca08g01707 Chr08 48921987 48922637 +
Phco Phco7g02963 Chr7 48437929 48438189 +
Pvu Pvu9g2596 Chr9 36414337 36414853 +
Aed Aed4g0683 Chr4 5772207 5772503 -
Cca Cca08g01708 Chr08 48928154 48928762 +
Gma Gma09g00379 Chr09 3569973 3570624 -
Phco Phco7g02964 Chr7 48440629 48440898 +
Rops Rops11g01525 Chr11 23035693 23058226 -
Ssu Ssu1g1295 Chr1 28574982 28575266 -
Vian Vian4g00109 Chr4 990301 990570 -
Vimu Vimu10g00165 Chr10 976946 977345 -
Pvu Pvu9g2597 Chr9 36424618 36425207 +
Adu Adu04g00948 Chr04 15928923 15929697 -
Aed Aed4g0682 Chr4 5768017 5768292 -
Aev Aev04g1144 Chr04 7267942 7268184 -
Dod Dod03g1289 Chr03 16403994 16404709 -
Gma Gma09g00378 Chr09 3561021 3561365 -
Lasa Lasa1g01553 Chr1 135910028 135910285 -
Ssu Ssu1g1294 Chr1 28498980 28499920 -
Vimu Vimu10g00164 Chr10 968452 972955 -
Lan Lan16g1126 Chr16 18334676 18351157 -