Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01701 ATGTGGAAACTCAAAGATAGCCCCTTTGTCAAAGAGCTAGAATCTGCAAAGGAAGCCATAGTTATACCTCCTTTTGTGTCAATGGCTTTGCGTCCAAGACCTGGTGTTTGGGAGTATGCTCGTGTTAATGCATTTGAACTCAATGTGGATAATCTGAGTGTTGCAGAATATCTACGATTCAAAGAAGAACTTGTAGATGGAGAGTGCAATGGCAAAAACGTGCTTGAACTAGATTTTGAGCCATTTAATGCAACATTCCCTGGACCAACTCGATCATCCTCTATTGGTAATGGGGTTCAATTTCTCAACCGTCATCTATCATCATTCATGTTTCGTAACAAAGAAAGTTTGGAACCTCTCCTTGCTTTTCTTCGCGCACACAAATATGATGGCCATGCAATGATGCTAAATGACCGCATCCGTAACATATCCAAGCTCCAGTCTTCTTTGGCAAAGGCAGAAGAAGTCCTTTCTAGGCTCATACCCAATACACCATATTCTGACTTTGAATATGAACTACAAGGATTGGGATTTGAGAGAGGTTGGGGTGATACAGCAGAGAGGGTGTCAGAAATGGTGCATCTTCTATTAGACATCCTTCAAGCTCCTGATCCAAACACCTTAGAGACATTTCTAGGAAGAATTCCTATGGTGTTCAATGTCGTAGTTGTATCACCACATGGTTACTTTGGCCAAGCAAATATTCTGGGTTTGCCTGATACTGGTGGGCAGACTATATATATACTTGATCAAGTGCGTGCCTTGGAAAATGAGATGCTTGACAAAATTCAAAAACAAGGACTTGATGTGTCTCCGAAAATTCTGATCGTTACAAGATTGATACCAGAGGCAAAAGGGACAACATGCAATCAGAGACTGGAAAGAGTTAGTGGAACTGAGCACACATATATATTGCGAGTAACTTTCAGAACTAAGAATGGAATTTTGAGAAAATGGATTTCAAAGTTTGACATGTGGCCTTATCTAGAGACATTTGCTGAGGATGCATCACACGAAATTGCAGCTGAGTTACAAGGAATTCCTGATCTGATAATAGGAAACTACAGTAATGGAAATCTTGTTGCAACCTTGTTATCGTATAAGCTAGGAATCACACAGTGCAACATAGCTCATGCATTGGAGAAAACTAAGTATCCTGATTCCGATATATATTGGAAAAAATATGAAGACAAGTACCATTTTACTTGTCAATTCACAGCTGACCTTATTGCAATGAACAATGCGGATTTTATAATCACTAGTACATACCAAGAAATTGCAGGAAGCAAGAATAATGTTGGACAATACGAGAGCTACACTGCCTTCACTCTTCCAGGACTATATCGTGTAGTTCATGGCATAGATGTTTTCGATCCAAAGTTTAATATCGTGTCTCCTGGTGCAGACATGCGCATGTATTTTCCATACTCCGACACAGAAAAGAGACTAACTTCTCTACATGGTTCGATTGAAAAGCTGGTATATGGTGCTGAACAGAATGAAGAGCACATTGGCTTGTTGAATGATAGATCAAAACCAATTATCTTTTCAATGGCAAAACTTGATGAAGTGAAAAATGTGACGGGGCTTGTTGAATGCTTTGGTAAAAGCTCCAAGCTGAGAGAGCTTGTGAATCTTGTGGTAGTTGGTGGTCACATTGATGTACACAAGTCTAGGGACAAAGAAGAAATGGGGGAGATAGAGAAAATGCACAGCCTCATAGAAAAATACAACTTACACGGCCAATTTCGTTGGATAAAGGCCCAAATGAACCGTGCTCGTAATGGGGAGCTATACCGTTGTATTGCTGATGTGAAAGGTGCTTTTGTGCAGCCTGCTTTTTATGAAGGGTTTGGCCTAACAATTGTGGAAGCTATGTCTTGTGGTCTTCCTACGTTTGCCACCTGTCATGGTGGCCCTGCTGAGATAATTGAGCATGGCATTTGTGGATTCCATATTGAGCCTCATCACCCTGATCATGTTGCTGCAATGTTAATAAACTTTTTTGAGCAATGCCAGCATGATCCTGGCTACTGGAACAAGATTTCTGATGCAGGGTTTAAGCGCATTCATGAGAGGTATACATGGAAGATATACTCTGAGAGGCTCCTGACTTTAGCTGGTGTGTATGGCTTTTGGAAGCATGTGTCTAAGCTTGAGAGGCGAGAAACTAGGCGGTACTTGGAGATGTTTTACATTCTCATGTTCCGGGATATGGTAAGCTTATTTTAA 2232 0.4082 MWKLKDSPFVKELESAKEAIVIPPFVSMALRPRPGVWEYARVNAFELNVDNLSVAEYLRFKEELVDGECNGKNVLELDFEPFNATFPGPTRSSSIGNGVQFLNRHLSSFMFRNKESLEPLLAFLRAHKYDGHAMMLNDRIRNISKLQSSLAKAEEVLSRLIPNTPYSDFEYELQGLGFERGWGDTAERVSEMVHLLLDILQAPDPNTLETFLGRIPMVFNVVVVSPHGYFGQANILGLPDTGGQTIYILDQVRALENEMLDKIQKQGLDVSPKILIVTRLIPEAKGTTCNQRLERVSGTEHTYILRVTFRTKNGILRKWISKFDMWPYLETFAEDASHEIAAELQGIPDLIIGNYSNGNLVATLLSYKLGITQCNIAHALEKTKYPDSDIYWKKYEDKYHFTCQFTADLIAMNNADFIITSTYQEIAGSKNNVGQYESYTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMRMYFPYSDTEKRLTSLHGSIEKLVYGAEQNEEHIGLLNDRSKPIIFSMAKLDEVKNVTGLVECFGKSSKLRELVNLVVVGGHIDVHKSRDKEEMGEIEKMHSLIEKYNLHGQFRWIKAQMNRARNGELYRCIADVKGAFVQPAFYEGFGLTIVEAMSCGLPTFATCHGGPAEIIEHGICGFHIEPHHPDHVAAMLINFFEQCQHDPGYWNKISDAGFKRIHERYTWKIYSERLLTLAGVYGFWKHVSKLERRETRRYLEMFYILMFRDMVSLF 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01701 743 Pfam Glycosyl transferases group 1 501 676 IPR001296 GO:0016757
Cca08g01701 743 Pfam Sucrose synthase 3 495 IPR000368 GO:0005985|GO:0016157
Cca08g01701 743 TIGRFAM sucr_synth: sucrose synthase 4 740 IPR012820 GO:0005985|GO:0016157
Cca08g01701 743 Gene3D Glycogen Phosphorylase B; 469 696 - -
Cca08g01701 743 Gene3D - 1 87 - -
Cca08g01701 743 Gene3D - 90 217 - -
Cca08g01701 743 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 237 706 - -
Cca08g01701 743 Gene3D Glycogen Phosphorylase B; 222 738 - -
Cca08g01701 743 PANTHER - 1 741 IPR012820 GO:0005985|GO:0016157
Cca08g01701 743 PANTHER SUCROSE SYNTHASE 2 1 741 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01701 Cca-Chr8 48806284 48813324 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01701 10 741 Glycosyltransferase AT5G49190 79.098 0.0 1253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01701 K00695 - gmx:100788717 1386.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01701 08 48806284 48813324 Cca08g01701 08 48806284 48813324 ECH