Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04019 ATGCCATCTTCCAGGTTTGATAGAGTTTCCAGCTTGAGGGACAGAGTGCAAGATACCCTCTCCAGTTACCGCAACGAGTTGATCTCTCTTCTCTCCAGGTATGTGGCTCGGGGAAAAGGAATACTACAACCACATGACCTGCTGGACGATGTAGAAAATATTGTGAAAGAAGATGAAGGAATGCAGAAACTCAAAGATAGCCCCTTTGTCAAGGCACTAGAATCTGCAAAGTTTTTAAAACCCATTGTTTTGTTCCTATTGTCACAGGAAGCTATAGTTCTACCTCCTTTCGTATCTATAGCATTGCGTCCAAGACCTGGTGTTTGGGAGTATTTCCGTGTTAATGTCTTTGAACTCAGTGTGGATAATCTGACTGTTGCGGAATATCTAAGATTCAAAGAAGAACTTGTAGATGGAGGGTGCAGGGCCAATTATGTGCTTGAACTAGACTTTGAGCCATTTAATGCTTCATTCCCTCGACCAACTCGATCACCCTCTATTGGTAATGGGGTTCAATTTCTCAACCGCCATCTATCTTCATTCATGTTCCGTAACAAAGAAAGTTTGGACCCTCTCCTTGCATTTCTTCGTGCACACAAATATGATGGCCATGCAATGATGCTAAATGATCGAATTCGTAACATATCCAAGCTCCAGTCTTCCTTGGCAAAGGCAGAAGAATTCCTTTCTAAGCTCCTACCAAATACACCATATTCTGACTTTGAATACGAACTACAAGGATTGGGATTCGAGAGAGGTTGGGGTGATACAGCACAGAGGGTGTTAGAAATGGTGCATCTTCTACTAGACATTTTCCAAGCTCCAGATCCAAATACCTTAGAGACATTTCTTGGAAGAATTCCTATGGTATTCAATGTTGTAATTGTATCACCACATGGTTACTTTGGCCAAGCAAATGTCTTAGGTTCGCCTGATACTGGTGGGCAGATTGTTTATATACTTGATCAAGTGCGTGCTTTGGAAAATGAGATGCTACTCAGAATTCAAAAGCAAGGACTTGATGTGTCTCCAAAAATTCTAATAGTTACAAGATTGATACCAGAGGCAAAAGGGACAACATGCAATCAGAGACTGGAAAGAGTTAGTGGAACTGAGCACACACATATATTGCGAGTACCTTTTAGAACTAAGAATGGAATTTTGAGAAAATGGATTTCAAGGTTTGACATGTGGCCTTATCTAGAGACATTTGCAGAGGATGCATCAAATGAAATTGCTGCTGAGTTACAAGGAGTTCCAGATCTGATAATTGGCAACTACAGTAATGGAAATCTTGTTGCAACCTTATTATCTTATAAGCTTGGAATAACACAGTGCAACATAGCTCATGCATTGGAGAAGACTAAGTATCCAGATTCTGATATATATTGGAAAAAATATGAAGACAAGTACCATTTTTCTTGTCAGTTCACAGCCGACCTTATTGCAATGAACTCCGCAGACTTTATAATCACTAGCACATACCAAGAAATTGCAGGGAGCAAGAATAATGTTGGACAATATGAGAGCCACACTGCCTTCACTCTTCCAGGACTTTACCGTGTTGTTCATGGCATTGATGTTTTTGATCCCAAGTTTAATATTGTGTCTCCAGGTGCAGACATGTGCATATATTTTCCATATTCAGAGAAAGAAAGGAGACTAACTTCTCTGCATGGTTCAATTGAAAAACTGGTATATGGCACTGAACAGAATGAAGAGCACATTGGCTTGTTAAAGGATCGATCAAAGCCCATTATCTTTTCTATGGGAAGTCTAGCTCGAGTGAAAAATATGTCAGGGCTTGTCGAATGCTTTGGTAAAAGCTCCAAGCTGAGAGAGCTTGTGAATCTTGTGGTTGTTGGTGGTGACATTGATGTACAGGAGTCCAGGGATAGAGAAGAGATGGGGGAAATAGAGAAGATGCATGTCCTCATAGAAAAATACAACTTGCATGGCCAGTTTCGATGGATAAAGGCCCAAATGAATCGTGCTCGTAATGGGGAGCTCTACCGTTATATTGCTGATGTGAAAGGTGCTTTTGTGCAGCCTGCTTTTTATGAAGCATTTGGCCTAACAGTTGTGGAAGCTATGACTTGTGGTCTTCCAACATTTGCCACTTGTCATGGTGGCCCTGCTGAGATAATTGAGCATGGAATTTCTGGATTCCATATTGATCCACACCACCCTGATCAGGTTGCTGAAATTTTAATAAACTTTTTTGAGCAATGCCGGTGTAATCCTGGCTACTGGAACAAGATTTCTGATGCAGGGCTCAGGCGTATCCATGAGAGGTATACATGGAAGATATACTCTGAGAGGCTACTGACTTTAGCAGGTGTTTATGGCTTCTGGAAGCATGTGTCTAAGCTTGACAGAAGAGAAACTAGGCGGTACTTGGAGATGTTTTACATTCTCAAGTTCAGGGATTTGATAAAATCAGTCCCACTGGCAGTCAATTAG 2463 0.4117 MPSSRFDRVSSLRDRVQDTLSSYRNELISLLSRYVARGKGILQPHDLLDDVENIVKEDEGMQKLKDSPFVKALESAKFLKPIVLFLLSQEAIVLPPFVSIALRPRPGVWEYFRVNVFELSVDNLTVAEYLRFKEELVDGGCRANYVLELDFEPFNASFPRPTRSPSIGNGVQFLNRHLSSFMFRNKESLDPLLAFLRAHKYDGHAMMLNDRIRNISKLQSSLAKAEEFLSKLLPNTPYSDFEYELQGLGFERGWGDTAQRVLEMVHLLLDIFQAPDPNTLETFLGRIPMVFNVVIVSPHGYFGQANVLGSPDTGGQIVYILDQVRALENEMLLRIQKQGLDVSPKILIVTRLIPEAKGTTCNQRLERVSGTEHTHILRVPFRTKNGILRKWISRFDMWPYLETFAEDASNEIAAELQGVPDLIIGNYSNGNLVATLLSYKLGITQCNIAHALEKTKYPDSDIYWKKYEDKYHFSCQFTADLIAMNSADFIITSTYQEIAGSKNNVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMCIYFPYSEKERRLTSLHGSIEKLVYGTEQNEEHIGLLKDRSKPIIFSMGSLARVKNMSGLVECFGKSSKLRELVNLVVVGGDIDVQESRDREEMGEIEKMHVLIEKYNLHGQFRWIKAQMNRARNGELYRYIADVKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGISGFHIDPHHPDQVAEILINFFEQCRCNPGYWNKISDAGLRRIHERYTWKIYSERLLTLAGVYGFWKHVSKLDRRETRRYLEMFYILKFRDLIKSVPLAVN. 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04019 820 PANTHER - 7 818 IPR012820 GO:0005985|GO:0016157
Seca6g04019 820 Gene3D - 160 289 - -
Seca6g04019 820 FunFam Sucrose synthase 541 768 - -
Seca6g04019 820 FunFam Sucrose synthase 160 289 - -
Seca6g04019 820 FunFam Sucrose synthase 3 406 532 - -
Seca6g04019 820 Pfam Glycosyl transferases group 1 572 742 IPR001296 GO:0016757
Seca6g04019 820 NCBIfam sucrose synthase 24 817 IPR012820 GO:0005985|GO:0016157
Seca6g04019 820 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 309 778 - -
Seca6g04019 820 Pfam Sucrose synthase 8 567 IPR000368 GO:0005985|GO:0016157
Seca6g04019 820 Gene3D Glycogen Phosphorylase B; 294 811 - -
Seca6g04019 820 Gene3D Glycogen Phosphorylase B; 541 768 - -
Seca6g04019 820 FunFam Sucrose synthase 11 159 - -
Seca6g04019 820 Gene3D - 11 159 - -
Seca6g04019 820 CDD GT4_sucrose_synthase 292 777 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04019 Seca-Chr6 107853002 107858955 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04019 1 816 Glycosyltransferase AT4G02280 74.632 0.0 1315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04019 K00695 - gmx:100788717 1446.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04019 6 107853002 107858955 Seca6g04019 6 107853002 107858955 ECH