LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod03g1301	ATGGCGAGTCATACCTCAGACCTTGTAACCCAGCTCAACCCGGCAACTCACCACTTCCACCTTGACTCCCTCCTCCACTATTGCACCTCCAACGTTTCTGGCTTCCCTCATGCACCCTCTCACTTCAATATCTTACAGTTTGGGCATGGACAATCGAACCCCACGTACTTGATGGAAGTGGGTTCTGGGGCCTCACCGGTGAAGCGCTATGTTCTGAGGAAGAAGCCTCCAGGGAAATTGCTGGCTTCAGCTCATGCTGTCGAAAGAGAATTTCAGGTTCTCAAGGCATTAGGCACACATACTCAAGTTCCGGTTCCTAAAGTTTTCTGCTTGTGCAATGATCCGACTGTTATTGGAACAGCGTTTTATATCATGGAGTTTTTGGAGGGACGCATATTTATTGACCCTAAGCTACCAGGTGTGGCACCAGAGAATAGGAGGACACTTTACCTGGAAACTGCTAAAACCTTAGCTTCCTTACATTCTTCTAATGTGGACTCCATTGGTCTGGGAAAATTTGGGCGGCGTAATGATTACTGTAAGAGACAGATTGAGAGGTGGGCCAAGCAATATGTTGCCTCAACCAGCGAAGGAAAACCGGCAAGAAATCCAAAAATGTTTGCACTGGTTGATTGGCTACAGTGCCAAATCCCTGCTGAGGATTCTTCAGGAGCAACAGCAGGTTTGGTTCATGGAGATTTTCGTGTTGACAATCTTGTGTTCCATCCCACTGAGGATCGAGTAATTGGTGTACTTGACTGGGAACTATCTACCCTTGGTAACCAGATGTGCGATGTCGCATATAGTTGTTTGCCTTACATTGCAGATATCGGGCATGAAAAAATACATGAAGGTATGGAACATTGTGGATTACCAGAGGGAATTCCTTCACTACCAGAATATTTGGCTGAATACTGCTTGCAGGCAGGAAAAAAATGGCCTGTTGCTGAGTGGAAGTTCTATGTTGCCTTTTCTTTGTTCCGAGGGGCTTCAATTTATGCAGGAGTGTATAATAGATGGGTTAAGGGTAATGCATCTGGAGGTGAGCGTGCTAGACATGCAGAAGTCCTTGGAAATGGTCTTATAGATGCTGCCTGGAACTTCATTGAACAAAAATCTGTGCTTCCTTTGCATCCTCCATCCGATGCAAATGCACGAGTCCATTCAAAAGAGTTAGTGAATGGGAGTGATATGCAGGGCCTCCTAAGTGGGGGGAAGTTTGTTCCTAGTCAAAAGGTTTTGACATTGAGGAACAAACTAATTAAGTTCATGGAAGAACACATATACCCCATGGAAAATGATTTTTCTAAACTTGCCCAGTCAGAATCACGTTGGACTGTTCACCCAGCAGAGGAGAAGCTAAAGGAGATAGCAAAGAAAGAAGGCTTGTGGAACTTATGGATTCCTCTTGATAGTGCTGCAAGAGCAAAAAAATTGCTTTTAGATGGGAGAGATGATTATCTCTCTAGTGATGCAAATGACTTGTTATTGGGTGCTGGTCTCACAAATCTTGAATATGGATACCTTTGTGAGATCATGGGCCGTTCTGTTTGGGCCCCACAAGTTTTTAATTGTGGTGCACCTGACACAGGTAATATGGAGGTGTTACTACGCTATGGAAATAAAGAACAATTACAAGAATGGCTTATCCCTTTGCTTGAGGGGAAGATTAGGTCTGGATTTGCAATGACAGAACCACGTGTCGCATCTTCTGATGCAACCAACATTGAGTGTTCTATCAAAAGACAAGGAGATTCATACATTATCAATGGGACAAAATGGTGGACAAGCGGGGCTATGGATCCAAGATGCAGAATTCTTATAGTCATGGTGAGTATTTATATAGTTGAAAGTTATTGCACTAAGAGTCCATATGCTATTCATGTGGATAGGGTGACCAAAACACATGCGCAGGGGAAAACTGACTTAACTGCAGCAAAGCACAAACAACAATCTATGATCTTAGTGGATATCAAGACTCCTGGAGTTCACATAAAGAGACCATTGATGGTGTTTGGCTTTGATGATGCACCTCATGGGCACGCAGAAATAACATTTGAAAATGTTTGTGTGCCAGCAAAAAATATCATACTGGGTGAAGGATGCGGATTTGAGATTGCCCAAGGTAGGCTAGGTCCAGGAAGGCTGCACCATTGTATGAGACTGGTAGGTGCTGCTGAGCGAGGCATGCAAATTATGGCCCAAAGAGCTCTAAGTAGAAGAACATTTGGGAAGTTGATTGCTCAACATGGTTCATTTCTTTCGGATGTGGCCAAGTGCCGAATAGAGCTAGAAAGGACCAGATTGTTGGTGTTGGAAGCAGCTGACCACCTTGATAGGCATGGGAACAAGAAAGCTAGAGGGATACTAGCAATGGCCAAGGTTGCCGCTCCAAACATGGCACTAAAGGTGCTTGACATGGCAATTCAAGTGCATGGGGCAGCTGGGGTATCATCTGACACTGTCCTAGCGCATCTGTGGGCCACTGCGAGGACACTGAGAATCGCAGATGGTCCGGACGAAGTCCACTTGGGTACCATTGCTAAGTTAGAACTCCAGAGAGCCAAGCTTTGA	2574	0.4487	MASHTSDLVTQLNPATHHFHLDSLLHYCTSNVSGFPHAPSHFNILQFGHGQSNPTYLMEVGSGASPVKRYVLRKKPPGKLLASAHAVEREFQVLKALGTHTQVPVPKVFCLCNDPTVIGTAFYIMEFLEGRIFIDPKLPGVAPENRRTLYLETAKTLASLHSSNVDSIGLGKFGRRNDYCKRQIERWAKQYVASTSEGKPARNPKMFALVDWLQCQIPAEDSSGATAGLVHGDFRVDNLVFHPTEDRVIGVLDWELSTLGNQMCDVAYSCLPYIADIGHEKIHEGMEHCGLPEGIPSLPEYLAEYCLQAGKKWPVAEWKFYVAFSLFRGASIYAGVYNRWVKGNASGGERARHAEVLGNGLIDAAWNFIEQKSVLPLHPPSDANARVHSKELVNGSDMQGLLSGGKFVPSQKVLTLRNKLIKFMEEHIYPMENDFSKLAQSESRWTVHPAEEKLKEIAKKEGLWNLWIPLDSAARAKKLLLDGRDDYLSSDANDLLLGAGLTNLEYGYLCEIMGRSVWAPQVFNCGAPDTGNMEVLLRYGNKEQLQEWLIPLLEGKIRSGFAMTEPRVASSDATNIECSIKRQGDSYIINGTKWWTSGAMDPRCRILIVMVSIYIVESYCTKSPYAIHVDRVTKTHAQGKTDLTAAKHKQQSMILVDIKTPGVHIKRPLMVFGFDDAPHGHAEITFENVCVPAKNIILGEGCGFEIAQGRLGPGRLHHCMRLVGAAERGMQIMAQRALSRRTFGKLIAQHGSFLSDVAKCRIELERTRLLVLEAADHLDRHGNKKARGILAMAKVAAPNMALKVLDMAIQVHGAAGVSSDTVLAHLWATARTLRIADGPDEVHLGTIAKLELQRAKL*	858

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod03g1301	857	Gene3D	-	559	701	IPR046373	GO:0016627
	Dod03g1301	857	Pfam	Acyl-CoA dehydrogenase, middle domain	560	689	IPR006091	GO:0016627
	Dod03g1301	857	Pfam	Acyl-CoA dehydrogenase, C-terminal domain	703	849	IPR009075	GO:0016627
	Dod03g1301	857	Pfam	Phosphotransferase enzyme family	44	278	IPR002575	-
	Dod03g1301	857	Gene3D	-	130	373	-	-
	Dod03g1301	857	PANTHER	ACYL-COA DEHYDROGENASE IBR3-RELATED	638	857	-	-
	Dod03g1301	857	PANTHER	ACYL-COA DEHYDROGENASE IBR3-RELATED	1	612	-	-
	Dod03g1301	857	SUPERFAMILY	Acyl-CoA dehydrogenase C-terminal domain-like	700	853	IPR036250	GO:0016627
	Dod03g1301	857	SUPERFAMILY	Acyl-CoA dehydrogenase NM domain-like	407	701	IPR009100	GO:0016627
	Dod03g1301	857	Gene3D	Phosphorylase Kinase; domain 1	21	129	-	-
	Dod03g1301	857	CDD	ACAD10_11_N-like	43	306	IPR041726	-
	Dod03g1301	857	Gene3D	-	408	557	IPR037069	GO:0016627\|GO:0050660
	Dod03g1301	857	PANTHER	MEDIUM-CHAIN SPECIFIC ACYL-COA DEHYDROGENASE, MITOCHONDRIAL-RELATED	1	612	-	-
	Dod03g1301	857	Pfam	Acyl-CoA dehydrogenase, N-terminal domain	415	556	IPR013786	GO:0016627\|GO:0050660
	Dod03g1301	857	PANTHER	MEDIUM-CHAIN SPECIFIC ACYL-COA DEHYDROGENASE, MITOCHONDRIAL-RELATED	638	857	-	-
	Dod03g1301	857	Gene3D	-	703	856	-	-
	Dod03g1301	857	SUPERFAMILY	Protein kinase-like (PK-like)	41	344	IPR011009	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod03g1301	1	855	Acyl Lipid Metabolism Gene Families	AT3G06810	73.341	0.0	1291

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod03g1301	K00249		-	gmx:100778771	1457.2

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Dod03g1301	03	16599449	16606264	Dod03g1301	03	16599449	16606264	ECH