Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1301 ATGTCCGCTTCCAGCGTGAGGGAGAGGGTGTATGTTGCTGGGGGCAAAGGAATTCTACAACCACATGACTTGTTCCTGTTATCACAGGAAGCCATAGTTCTACCTCCTTTTGTGTCTATAGCTTTGCGTCCAAGACCTGGTGTTTGGGAGTATGTTCGTGTTAATGCATTTGAACTGAATGTGGATAATCTGAGTGTTGCAGAATATCTCCGATTCAAAGAAGAACTTGTAGATGGAGAGTGCAGTGACAATTATGTGCTTGAACTAGACTTTGAGCCATTTAATGCAACATTCCCTAGACCAACTCGATCAGCCGCCATTGGTAATGGGGCAATGATGTTAAATGACCGCATTAGTAACATATCCAAGCTCCAGTCTTCCTTGGCAAAGGCAGAAGAATTCCTTTCTAGGCTCCTACCCAATACACCATATTCTGACTTTGAATATGAACTACAAGGATTGGGATTTGAGAGAGGTTGGGGTGATACAGCAGAGAGGGTGTTAGAAATGGTGCATCTTCTACTAGACATCCTTCAAGCTTCTGATCCAAACACCTTAGAGACATTTCTAAGAAGAATTCCTATGGTATTCAATGTCGTAATTGTATCACCACATGGTTACTTTGGCCAAGCAAATATCTTGGGTTTGCCTGATACTGGTGGGCAGGTTACAAGATTGATACCAGAGGCAAAAGGGACAACATGCAATCAGAGACTGGAAAGAGTTAGTGGAACTGGGCACACATATATACTGCGAGTACCTTTTAGAACTAAGAATGGAATTTTGAGAAAATGGATTTCAAAGTTTGACATGTGGCCTTATCTAGAGACATTTGCAGAGGATGCATCACATGTAATTGCGGCTGAGTTACAAGGAATTCCAGATCTGATAATTGGCAACTACAGCGATGGCAATCTTGTTGCAACCTTGTTATCTTATAGGCTAGGAATCACACAGTGCAACATAGCTCATGCGTTGGAGAAGACAAAGCATCCTGATTCTGATATATATTGGAAAAAATATGAAGACAAGTGCCATTTTACTTGTCAATTCACAGCTGACCTTATTGCAATGAGCAATGCGGATTTTATAATCACtagAGTGCTTAAGGCCGAGATGGATGCAGATTACCTGCAGTCGGAGAGTGGAAAAGATTGA 1158 0.4171 MSASSVRERVYVAGGKGILQPHDLFLLSQEAIVLPPFVSIALRPRPGVWEYVRVNAFELNVDNLSVAEYLRFKEELVDGECSDNYVLELDFEPFNATFPRPTRSAAIGNGAMMLNDRISNISKLQSSLAKAEEFLSRLLPNTPYSDFEYELQGLGFERGWGDTAERVLEMVHLLLDILQASDPNTLETFLRRIPMVFNVVIVSPHGYFGQANILGLPDTGGQVTRLIPEAKGTTCNQRLERVSGTGHTYILRVPFRTKNGILRKWISKFDMWPYLETFAEDASHVIAAELQGIPDLIIGNYSDGNLVATLLSYRLGITQCNIAHALEKTKHPDSDIYWKKYEDKCHFTCQFTADLIAMSNADFIITRVLKAEMDADYLQSESGKD 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1301 385 PANTHER SUCROSE SYNTHASE 2 111 223 - -
Ssu1g1301 385 PANTHER SUCROSE SYNTHASE 2 28 110 - -
Ssu1g1301 385 Gene3D - 22 99 - -
Ssu1g1301 385 PANTHER SUCROSE SYNTHASE 2 223 368 - -
Ssu1g1301 385 PANTHER - 28 110 IPR012820 GO:0005985|GO:0016157
Ssu1g1301 385 Pfam Sucrose synthase 223 367 IPR000368 GO:0005985|GO:0016157
Ssu1g1301 385 Pfam Sucrose synthase 24 111 IPR000368 GO:0005985|GO:0016157
Ssu1g1301 385 Gene3D Glycogen Phosphorylase B; 196 223 - -
Ssu1g1301 385 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 231 366 - -
Ssu1g1301 385 PANTHER - 223 368 IPR012820 GO:0005985|GO:0016157
Ssu1g1301 385 PANTHER - 111 223 IPR012820 GO:0005985|GO:0016157
Ssu1g1301 385 Gene3D - 100 195 - -
Ssu1g1301 385 Gene3D Glycogen Phosphorylase B; 224 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1301 Ssu-Chr1 28779716 28783023 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1301 28 366 Glycosyltransferase AT5G49190 65.432 0.0 542
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1301 K00695 - gmx:100788717 613.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1301 1 28779716 28783023 Ssu1g1301 1 28779716 28783023 ECH