Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04017 ATGACTAAAGACACAGCGGAACCGAGCGGTGGGAGATTCCACGCGGTTCATGCGGAGCGTGACCTAGAATCCAATTGGGAAGTTGACCTAGCCAAGAAACTTGAGGAGTATCTACTGAAAATATGCTCCGGCGAAATCACTGGCGAAGAAGAAGGCCATATTTCTGTAAATTTTGCCGAAGCTGCTCTGTTGCTTCAGGGTTCCATTCAGGTGTATAGTCGGAAGGTGGAGTATCTCTACAACTTGGTATTGCGTGCTTTAGAGTTCCTTTCTCAGAAAAGACAGCAGGATCATGTAGATGGGGCATCAGTCCAACCTGAAGAGAGTGGTCCCTCTGCTGTTGCTGATGAAGAAAATGATCAATTCTGGGGCTTAGATGACATCCCAGTTGATGAAAAGAATTCCTTGGATAGTTCAACAGGCAAAGAAGTGAATTTGGATCACTTTATAAAACCCCCTGCAAATCTAGTTGTTCTTGAAGGTGACTGCTTGGATGCTGTTGGTGATGGAGGGGAGTTGGAATCTTATCTGTTGTCCACCACAGACTTGTACCAGGATTTTATTTTATTGGACACATCTGATGCTGTTGCAGTTGATGAGTTTCTGAAGGACAGAAAAGCTGGTACGACACAAAATGGTACTATTAAAGGAACCTCAACTCGTAAAAGCTTTCTTTCTCCTAGACGTTCCGGTGGAAGTGCTCTTAAACCATCAGCTGCAAAGAGTCAACGTGCTAATTCCATCAACTCTCCTAAAAATATTAGTCTTGATGACAAAAATGTTCGGCCCAGTTCTCCTGCCTCTGCTGGTCTTGATAACTGTAACTTTGGATTTCATATGGATGATGCATGTGATACACCTAGGGATTCAGACAATTCAGATGCAGATGATGATCCATGGAAACCTTTGAATCCTCATGAACCAGGCAACTTAAGGGTGAAGCCTTTTAGAAAAGTGAAAGGTATAAGAAGGATTGGCATCAATGTGACAGATCGAGTATCTATGAGCACCTTGTTTCCACTTGCAAAATTGCATGGTCCTATCAGTCCAGAGCTCATGGAAATGTGGGAGATGAGACATCATGCCCATGAACGAAAAGGGGATTCCCAATCTCCTCCACCATTATATGAGAAGCTGAGGCGATCTCTTATTCGTGAGGGGAATGAAACTGGTGGATCATTTTTTAACTCTGAAGCTGACAATGATGACATTGAATATGATAGTGGAAATCCTGATTTTGATATGTCTGGCAATGCCTACATGGATGAAGATCTACCTCCTTGCAATAAAGAGCATGAAATTGATGATGCTCATGTCAAGGCTGATGAAGCTGTAGATCTTGAATATCCAAATTCCCAGACAAGTTTGGAAGATCTTTGTCGCTCTCACCTGAACGCTCTCCTAGCTAGCATAGCTGAAACTGAGAAGCAAACTGAAATGGCTGCCAGGGTTTCAACATGGAAACAAAGAATTGAGCACAACTTAGAAGAACAGGAATCACACCCACCATTTGATATCCGAGACTATGGTGTAAGAATTCTTGACAAACTATCCCTTGAAGCAAGCAGTAGCGGTGTCCTATCCTTTTCTGATTTGGTTAAGGAACAGGAAAAGTATGATGTGTCCCGAAGTTTTGCTTCTCTTCTTCAACTGGTGAACAATGGAGAAGTAGATCTAGAAAGAAATGGAGTTGGTGGGGAGCCAGTTTGCTACACAGCTGTTAATCCTTTTAAGGTTAGGCTCCTTAAGCATAACAAGAAACGAGAGGATGCCCAGCTTCAGTTGTCAAAAAAGAGAGTGAAGTCACCAACAAAAAAACCATCTATAAAAGGTGACAAGAACAAAACTAGAAAAGAAAAGTTTCCCACCAGGAGTTCATCTAGGAAATTAGGATCAACAGTGTTGTCACCGCCTGCCAATTGTAAGTTTTCTGTAAAGCTTGGAAAGGTGAGTCCCATAAAGTTCACTCCTGAAGTCAAGAGAAGGCGTGGATCTCAGTATGTAGAACCAGTTAACTTACATTCAGCAGGGTGA 2034 0.4253 MTKDTAEPSGGRFHAVHAERDLESNWEVDLAKKLEEYLLKICSGEITGEEEGHISVNFAEAALLLQGSIQVYSRKVEYLYNLVLRALEFLSQKRQQDHVDGASVQPEESGPSAVADEENDQFWGLDDIPVDEKNSLDSSTGKEVNLDHFIKPPANLVVLEGDCLDAVGDGGELESYLLSTTDLYQDFILLDTSDAVAVDEFLKDRKAGTTQNGTIKGTSTRKSFLSPRRSGGSALKPSAAKSQRANSINSPKNISLDDKNVRPSSPASAGLDNCNFGFHMDDACDTPRDSDNSDADDDPWKPLNPHEPGNLRVKPFRKVKGIRRIGINVTDRVSMSTLFPLAKLHGPISPELMEMWEMRHHAHERKGDSQSPPPLYEKLRRSLIREGNETGGSFFNSEADNDDIEYDSGNPDFDMSGNAYMDEDLPPCNKEHEIDDAHVKADEAVDLEYPNSQTSLEDLCRSHLNALLASIAETEKQTEMAARVSTWKQRIEHNLEEQESHPPFDIRDYGVRILDKLSLEASSSGVLSFSDLVKEQEKYDVSRSFASLLQLVNNGEVDLERNGVGGEPVCYTAVNPFKVRLLKHNKKREDAQLQLSKKRVKSPTKKPSIKGDKNKTRKEKFPTRSSSRKLGSTVLSPPANCKFSVKLGKVSPIKFTPEVKRRRGSQYVEPVNLHSAG. 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04017 677 MobiDBLite consensus disorder prediction 209 227 - -
Seca6g04017 677 MobiDBLite consensus disorder prediction 285 303 - -
Seca6g04017 677 MobiDBLite consensus disorder prediction 588 634 - -
Seca6g04017 677 MobiDBLite consensus disorder prediction 236 271 - -
Seca6g04017 677 Pfam Condensin II complex subunit CAP-H2 or CNDH2, N-terminal 12 128 IPR009378 -
Seca6g04017 677 MobiDBLite consensus disorder prediction 209 272 - -
Seca6g04017 677 MobiDBLite consensus disorder prediction 605 625 - -
Seca6g04017 677 Pfam Condensin II complex subunit CAP-H2 or CNDH2, mid domain 151 297 IPR031719 -
Seca6g04017 677 PANTHER CONDENSIN-2 COMPLEX SUBUNIT H2 9 671 IPR031739 GO:0030261
Seca6g04017 677 MobiDBLite consensus disorder prediction 388 411 - -
Seca6g04017 677 MobiDBLite consensus disorder prediction 285 312 - -
Seca6g04017 677 Pfam Condensin II complex subunit CAP-H2 or CNDH2, C-term 299 590 IPR031737 -
Seca6g04017 677 Gene3D Structural maintenance of chromosome 1. Chain E 505 567 IPR023093 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04017 Seca-Chr6 107821980 107827848 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04017 K11490 - gmx:100786571 1012.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04017 6 107821980 107827848 Seca6g04017 6 107821980 107827848 ECH