Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2249 ATGACTAGAGACAATCCGGAACCAGCAGGTGGAGGATTCCACACGGTTCACGCCGAGCGGGACCTTCAATCCAATTGGGAAGTTGACCTCGCCAAGAAACTTGAGGATTATCTGCTGAAAATCTGCTCCGGCGAGATCACCGGCGAAGAAGAAGGTCACATTCCTGTGAATTTCGCTGAAGCTGCTCTTCTGCTTCAGGGTTCCATTCAGGTGTATAGTCGAAAGGTGGAATATCTCTACAGCTTGGTACTAAAGGCTTTGGAGTTTCTCTCTCAGAAAAGACAGCAGGAGCATGTAGATGGGACATCAGCCCAACCTGAAGAGAGTGGTCCCTCTGCTGTTGCTGATGAAGAAAATGATGAATTCTGGGGCTTAGATGACATCCCAGTTGAGGAAAAGAATTCCTTGGATGCTTCAACAGGCAAAGAAGTGAACTTGGATCAATTTATAAAACCCCCTGCAAATCTAGTTGTTCTTGAAGGTGACTGCTTGGATGCTGTTGGTGATGGAGGAGAATTGGAGTCTTATCTGTTGTCCACCACTGACTTGTACCAGGATTTCATTTTATTGGACTCATCTGATGCTGTTGCAGTTGATGAGTTTCTGAAGGGTAGAAAAGCTGTTATGACACAAAATGGTACAAGTAGAGGATTCTCAAATCGTAAAAGCTTTCTATCTCCAAGACGTACTGGGGGAAGTGCTCATAGAGCATCAGCTGCAAAGAGTCCGCGTGCTAATTCCAACTGCTCTCCTAAAAATTTAAATTTTGATGACAACAATGCTGGCCCCAGTTCTCCTGTTTCTGCTGGTCTTGATAACTGTGACTTCGGATTTAATATGAATGACGGATTTGATACTTCGAGGGATTCAGACAATTCAGATGCAGATGGTGATGACCCATGGAAACCTTTGAATCCCCATGAACCAGGAAACTTGAGAGTGAAGCCCTTTAGAAAAGTGAAAGCTTTAAGAAAGACTGCCATCAATGTGACGCGTCCAATATCTACTAGCACTTTGTTTCCACCAGCAAAATTGCATGGTCCTGTCAGCCCAGAGCTCATGGAATTGTGGGAGATGCGACATCCTGCCCATGAACGAGAAAAAGAATCTCAACCTCCTCCACCCTTATATGAGAAGCTGAGGCAATCTCTTATTAATGAGGAGAATGAAACTGGTGGAATTTTTTTTAACTCTGAAGCAGACAATGATGACAACGAATACGATAGTGGAAATCCTGATTTTGATATGCCTGGCAGTGCCTTCATGGATGAAGATCTACCTCCTGGCAATAACGAGCATGGAGTTGACGATGCTCATGTCAATGTTGATGAAGAATTTCCAAATTCTCAAACAAGTATGGAAGATCTTTGCCGCTCTCACCTGAATGCTCTCCTAGCTAGCATAGCTGAAAATGAGAAGCAAACTGAAATGGCTGCTAGGGTTTCAACGTGGAAACAAAGAATTGAGCACAACTTAGAAGAACAGGATTCACACCCACCATTTGATATCCAAGACTATGGTGCAAAAATCCTTGACAAACTATCCCTTGAATCAAGCAGTGGCGGAGGTGTCCTGTCCTTTTCTGATTTGGTAAAGGGTCAAGAAAAGTATGATGTATCCAGAAGTTTTTCTGCACTTCTTCAACTGGTAAACAATCGAGACGTAGATCTAGAAAGAAATGGATTTGAAGGGGGTTCTGTTTGCTACACCACTGATAATCCATTTCATGTTAAGCTCCTTGAGAATGATAAGAACCGGGAGAACAAGCAGCCGCCGCTGTTGTCAAAAAAGAGACAGAAGTCTCCAACGAAAAAACCACCTACAAAAGGCGGTGATGCGAACAAAACCAGAAGAGATAAGTCTCCCTCCGCGAGTTCAGGTTCTAGGAAATCTGGATCATCAGGGGTGTCGGCACCTGGAAATTGTAAGTTCTCTGTGAAGCTTGGAAAGGTGAGTAGTGGCATAAGGCTCTCCCCTGAATCTAAGAGAAGGCGTAGATCTCAGTATGCGGAACCAGTTAACTCATCTTCAGCAGGTTGA 2040 0.4402 MTRDNPEPAGGGFHTVHAERDLQSNWEVDLAKKLEDYLLKICSGEITGEEEGHIPVNFAEAALLLQGSIQVYSRKVEYLYSLVLKALEFLSQKRQQEHVDGTSAQPEESGPSAVADEENDEFWGLDDIPVEEKNSLDASTGKEVNLDQFIKPPANLVVLEGDCLDAVGDGGELESYLLSTTDLYQDFILLDSSDAVAVDEFLKGRKAVMTQNGTSRGFSNRKSFLSPRRTGGSAHRASAAKSPRANSNCSPKNLNFDDNNAGPSSPVSAGLDNCDFGFNMNDGFDTSRDSDNSDADGDDPWKPLNPHEPGNLRVKPFRKVKALRKTAINVTRPISTSTLFPPAKLHGPVSPELMELWEMRHPAHEREKESQPPPPLYEKLRQSLINEENETGGIFFNSEADNDDNEYDSGNPDFDMPGSAFMDEDLPPGNNEHGVDDAHVNVDEEFPNSQTSMEDLCRSHLNALLASIAENEKQTEMAARVSTWKQRIEHNLEEQDSHPPFDIQDYGAKILDKLSLESSSGGGVLSFSDLVKGQEKYDVSRSFSALLQLVNNRDVDLERNGFEGGSVCYTTDNPFHVKLLENDKNRENKQPPLLSKKRQKSPTKKPPTKGGDANKTRRDKSPSASSGSRKSGSSGVSAPGNCKFSVKLGKVSSGIRLSPESKRRRRSQYAEPVNSSSAG* 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2249 679 MobiDBLite consensus disorder prediction 97 116 - -
Lja6g2249 679 Pfam Condensin II complex subunit CAP-H2 or CNDH2, N-terminal 14 128 IPR009378 -
Lja6g2249 679 MobiDBLite consensus disorder prediction 625 640 - -
Lja6g2249 679 MobiDBLite consensus disorder prediction 581 679 - -
Lja6g2249 679 MobiDBLite consensus disorder prediction 212 227 - -
Lja6g2249 679 Pfam Condensin II complex subunit CAP-H2 or CNDH2, mid domain 151 265 IPR031719 -
Lja6g2249 679 MobiDBLite consensus disorder prediction 240 267 - -
Lja6g2249 679 MobiDBLite consensus disorder prediction 282 312 - -
Lja6g2249 679 MobiDBLite consensus disorder prediction 212 268 - -
Lja6g2249 679 Pfam Condensin II complex subunit CAP-H2 or CNDH2, C-term 300 588 IPR031737 -
Lja6g2249 679 MobiDBLite consensus disorder prediction 610 624 - -
Lja6g2249 679 MobiDBLite consensus disorder prediction 287 303 - -
Lja6g2249 679 PANTHER CONDENSIN-2 COMPLEX SUBUNIT H2 10 667 IPR031739 GO:0030261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2249 K11490 - gmx:100786571 947.192
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2249 6 51426787 51433176 Lja6g2249 6 51426787 51433176 ECH