Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09373 ATGACTAAAAACACATCGGAACCGAGTGGAGGGGCATTCCACGCGGTTCATGCGGAGCGTGACCTACAATCCAATTGGGAAGTTGACCTAGCGAAGAAACTTGAGGAGTATCTGATAAAAATATGCTCTGGTGAAATCACTGGCGAAGAAGAAGGGAACATTCATGTCAATTTTGCTGAAGCTGCTCTACTGCTTCAGGGTTCAATACAGGTGTATAGTCGAAAGGTTGAGTATCTCTACAACTTGGTATTGCGTGCTTTGGAGTTCCTTTCTCAGAAAAGACAGCCAGATCAGGTAGAAGGAGAATCCGTCCAACCTGATGATGAAGCTGGTCCCTCTGCCGCTGTTACTAATGAAGAAAATGATCAATTCTGGATCTTAGATGACATCCCAGTTGAAGAAAAGATTTCATTGGACAGTTCAACAAGCAAAGACGTGAATTTGGATCTCTTCATAAAACCCCCTGCAAATCTAGTTGTTCTTGAAGGAGACTGCTTGGATACTGGTGGTGATGGAGGGGAATTGGAGTCTTATCTGCTGTCCACCACAGACTTGTACCAGGATTTTATTTTATTGGACACATCTGATGCCGTTGCAGTTAATGAGTATATGAAGGGGGGAAAAGCTGGTACTGCATTTAATGGTACTAACAGAGCAACCTCAACTCGTAAAGGCTTTCTTTCTCCTAGACGTTCCGGTGGAAGTGCTCGTAAATCAGCTGCAAAGAGTCAGCGTGCTAATACCGTGATCTCTCCTAAAAATATTAGTTTTGAAGACAAAGAAGCTCGGCTCAGTCCTCCAGCCTCCGCTGGTTTTGATAACACTAACTTTGGACCTAATATGGATGATGGATTTGATGCACCTAGGGATGGCGACAATTCTGATGAAGATGATGAAGATCCATGGAAGCCATTGAATCCTCATGAAACAGGAAACTTGCGAGTAAAGCCCTTTCGAAAAGTAAAAACTACAAGAAGAACTAGAATCAATGTGAGACATCGAGTATCTATGAGCACCTTTTTTCCACCTGCCAAATTGCATGGTCCTATCAGTCCAGAGCTCACGGAAATGTGGGAGATGCGACAATGTGCCCAACAGCGACAAAAGGATTCTCAATCTACTCTTCCATTATACGAGACGCTGAGACAATCTCTTACTAGTGAGGGAAATGAAACCGGTGTACCATTTCTTAACACTGAAGATGATAATGATGATAACGAATTTGATAATGGATTTCCCGATTTTGATATGCCTGGCAATGACTTCATGGATGAAGACCAACGCCCTTTCAATAAAGAGCACGGAGTTGATGGTGTTAATGCTAATGCCGATGAAGCTGTAGATCCTGAATTTCCAGATTCTCAGACAAGTTTGGAAGATCTTTGCCGCTCTCATCTGAATGCTCTCCTAGCTAACATAGCCGAATCTGAGAAACAAACAGAAATGGCTGCAAGAGTTTCAACATGGAAGCAAAGAATTGAGCAAAACTTGGAAGAACAGGATTCACACCCACCGTTTGAATTCCGAGACTACGGTGAAAGACTTCTTGAGAAACTATCCCTTGAAGAAAGCAGTGGCAGTGTCTTGCCCTTTTCCGATTTGGTCAAGGGACAAGAAAAGTATGACATCTCCCGAAGTTTCTCTTCACTCCTTCAATTGGTGAACAATGGAGAAGTTGAACTACAAAGACACGATGTTCCAGGGGAATCTCTTTGTTACACAGGTGTTAATCCTTTTCATGTTAGGCTCCTAAAGCATGACAAGAAAAAGGAGGTTGGGAAGCAGTTTGGTATGGCCAAAAAGCGAGCGAAATCTCCGACAAAATATCCAGCTACAAAAGATGAGAAGAAAAAGAAAATTAGAAGAGAAAAGTCTCCGATCAGTTCATCTTCTAGGAAACATGGACGAACAACAGAGTTAGCATCACCCACAAATTGTAAGTTATCTGTAAACCTTGGAAAGGTCAGTGCTATGAAATTCTCTCCTCCATCCAAGAGACGGCGTAGATCTCCCTTTGTTGAGCCAGTTAATTCAGCAGGGTGA 2043 0.4273 MTKNTSEPSGGAFHAVHAERDLQSNWEVDLAKKLEEYLIKICSGEITGEEEGNIHVNFAEAALLLQGSIQVYSRKVEYLYNLVLRALEFLSQKRQPDQVEGESVQPDDEAGPSAAVTNEENDQFWILDDIPVEEKISLDSSTSKDVNLDLFIKPPANLVVLEGDCLDTGGDGGELESYLLSTTDLYQDFILLDTSDAVAVNEYMKGGKAGTAFNGTNRATSTRKGFLSPRRSGGSARKSAAKSQRANTVISPKNISFEDKEARLSPPASAGFDNTNFGPNMDDGFDAPRDGDNSDEDDEDPWKPLNPHETGNLRVKPFRKVKTTRRTRINVRHRVSMSTFFPPAKLHGPISPELTEMWEMRQCAQQRQKDSQSTLPLYETLRQSLTSEGNETGVPFLNTEDDNDDNEFDNGFPDFDMPGNDFMDEDQRPFNKEHGVDGVNANADEAVDPEFPDSQTSLEDLCRSHLNALLANIAESEKQTEMAARVSTWKQRIEQNLEEQDSHPPFEFRDYGERLLEKLSLEESSGSVLPFSDLVKGQEKYDISRSFSSLLQLVNNGEVELQRHDVPGESLCYTGVNPFHVRLLKHDKKKEVGKQFGMAKKRAKSPTKYPATKDEKKKKIRREKSPISSSSRKHGRTTELASPTNCKLSVNLGKVSAMKFSPPSKRRRRSPFVEPVNSAG 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09373 680 MobiDBLite consensus disorder prediction 607 630 - -
Vifa1g09373 680 MobiDBLite consensus disorder prediction 95 115 - -
Vifa1g09373 680 MobiDBLite consensus disorder prediction 214 228 - -
Vifa1g09373 680 Pfam Condensin II complex subunit CAP-H2 or CNDH2, N-terminal 14 130 IPR009378 -
Vifa1g09373 680 MobiDBLite consensus disorder prediction 237 254 - -
Vifa1g09373 680 Pfam Condensin II complex subunit CAP-H2 or CNDH2, C-term 301 591 IPR031737 -
Vifa1g09373 680 Pfam Condensin II complex subunit CAP-H2 or CNDH2, mid domain 153 300 IPR031719 -
Vifa1g09373 680 PANTHER CONDENSIN-2 COMPLEX SUBUNIT H2 9 676 IPR031739 GO:0030261
Vifa1g09373 680 MobiDBLite consensus disorder prediction 214 312 - -
Vifa1g09373 680 MobiDBLite consensus disorder prediction 592 680 - -
Vifa1g09373 680 MobiDBLite consensus disorder prediction 631 651 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09373 K11490 - gmx:100785753 836.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g09373 1 1480856145 1480860753 Vifa1g09373 1 1480856145 1480860753 ECH