Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3549 ATGACTAAAGATACATCGGAACCGAGTGGAGGGGCATTCCACGCGGTTCATGCGGAGCGGGACTTACAATCCAATTGGGAAGTTGACCTAGCCAAGAAACTCGAGGAGTATCTGATAAAAATATGCTCCGGTGAAATCACTGGCGAAGAAGACGGAAACATTCATGTCAATTTTGCTGAAGCTGCTCTACTGCTTCAGGGTTCAATACAGGTGTATAGTCGAAAGGTTGAATATCTCTACAACTTGGTATTGCGTGCTTTGGAGTTCCTTTCTCAGAAAAGACAGCCAGATCAGGTAGAAGGAGAATCCGTCCAACCTGATGATGAAGCTGGTCCCTCTGCTTCTGCTGCTGCTGTTGCTGATGAAGAAAATGATCAATTCTGGGGATTAGATAACATCCCAGTTGAAGAAAAGAATTCACTGGACAGTTCAACAGGTAAAGAAGTGAATTTGGATCTCTTCATTAAACCCCCTGCAAATCTAGTTGTTCTTGAAGGTGACTGCTTGGATACTGGTGGTGATGGAGGGGAATTGGAGTCTTATCTGCTGTCCACCACTGACTTGTACCAGGATTTTATTTTATTGGACACGTCTGATGCTGTTGCCGTTAATGAGTATATTAAGGTGGGAAAGGCTGGTACGGCATATAATGGTACTAATAGAGCTACCTCAACTCGTAAAGGCTTTCTTTCTCCTAGACGTTCTGGTGGAAGTGCTCATAAATCAGCTGCGAAGAGTCAGCGTGCTAATACCGTGTTATCTCCTAAAAATATTAGTTTTGAAGACAAAGAAGCTCGGGTCAGTCCTCCGGCCTCCGCCGGTTTTGGTAACACTGACTTTGGACCTAATATGGATGATGGGTTTGATGCACCAAGGGATGCAGACAATTCTGATGAAGATGATGAAGATCCATGGAAGCCGTTGAATCCTCATGAAACAGGAAACTTGAGAGTAAAGCCCTTTCGAAAAGTGAAAACTTCAAGAAAAACTAGAATCAATGTGAAACATCGAGTATCTATGAGCACATTATTTCCACCTGCCAAATTGCATGGTCCTATCAGTCCAGAGCTCACGGAAATGTGGGAGATGAGACAATGTGCCCAACAGCGACAAAAGGATTCTCAATCTACTCTACCATTATATGAGAAGCTGAGACAATCTCTTACTACTGACGGAAATGAAACTGGTCTACCATATCTTAACACTGAAGATGACAATGATGATAACGAAAACGAATTTGATAACGGATTTCCCGATTTTGATATTCCTGGCAATGACTTCATGGATGAAGACCAACACCCTTTCAATAAAGAGCATGGAGTTCATGCCAATGCTGATGAAGCTGTAGATCCTGAATTTCCAGATTCTCAGACAAGTTTGGAAGATCTTTGCCGCTCTCATCTGAATGCTCTCCTAGCTAACATAGCTGAATCTGAGAAGCAAACAGAAATGGCTGCAAGAGTTTCAACATGGAAGCAAAGAATTGAGCAAAATTTAGAAGAACAGGATTCACACCCACCGTTTGAGTTCCGAGACTACGGTGAAAGACTTCTTGACAAACTATCCCTTGAAGAAAGTAGTGACAATGTCTTACCCTTTTCTGATTTGGTCAAGGGACAAGAAAAATATGACATCTCCCGAAGTTTCTCTTCACTCCTTCAATTGGTGAACAATGGAGAAGTCGAACTACAAAGACATGATGTTCCTGGGGAATCGCTTTGTTACACAGGTGTTAATCCTTTTCATGTTAAGCTCCTAAAGCATGACAAGAAAAAGGAGGTTGGGAAGCAGTTTGGTATATCCAAAAAGCGAGTAAAGTCTCCAACAAAAAATCCACCTACAAAAGATGAGAGGAAGAAAATAATTAGAAGAGAAAAGTCTCCAATCAGTTCATCTTCGAGGAAACATGGACGAACAGAGTTAGCATCACCTACAAATTGTAAGTTTTCTGTAAACCTTGGAAAAGTGAGTGCTATGAAATTCTCACCTGAATCCAAGAGACGGCGTAGATCTGTTGAGCCAGTTAACCTACATTCAGCAGGGTGA 2046 0.4203 MTKDTSEPSGGAFHAVHAERDLQSNWEVDLAKKLEEYLIKICSGEITGEEDGNIHVNFAEAALLLQGSIQVYSRKVEYLYNLVLRALEFLSQKRQPDQVEGESVQPDDEAGPSASAAAVADEENDQFWGLDNIPVEEKNSLDSSTGKEVNLDLFIKPPANLVVLEGDCLDTGGDGGELESYLLSTTDLYQDFILLDTSDAVAVNEYIKVGKAGTAYNGTNRATSTRKGFLSPRRSGGSAHKSAAKSQRANTVLSPKNISFEDKEARVSPPASAGFGNTDFGPNMDDGFDAPRDADNSDEDDEDPWKPLNPHETGNLRVKPFRKVKTSRKTRINVKHRVSMSTLFPPAKLHGPISPELTEMWEMRQCAQQRQKDSQSTLPLYEKLRQSLTTDGNETGLPYLNTEDDNDDNENEFDNGFPDFDIPGNDFMDEDQHPFNKEHGVHANADEAVDPEFPDSQTSLEDLCRSHLNALLANIAESEKQTEMAARVSTWKQRIEQNLEEQDSHPPFEFRDYGERLLDKLSLEESSDNVLPFSDLVKGQEKYDISRSFSSLLQLVNNGEVELQRHDVPGESLCYTGVNPFHVKLLKHDKKKEVGKQFGISKKRVKSPTKNPPTKDERKKIIRREKSPISSSSRKHGRTELASPTNCKFSVNLGKVSAMKFSPESKRRRRSVEPVNLHSAG* 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3549 681 Pfam Condensin II complex subunit CAP-H2 or CNDH2, N-terminal 14 133 IPR009378 -
Psa1g3549 681 Pfam Condensin II complex subunit CAP-H2 or CNDH2, mid domain 156 303 IPR031719 -
Psa1g3549 681 MobiDBLite consensus disorder prediction 596 646 - -
Psa1g3549 681 MobiDBLite consensus disorder prediction 658 681 - -
Psa1g3549 681 MobiDBLite consensus disorder prediction 95 118 - -
Psa1g3549 681 Pfam Condensin II complex subunit CAP-H2 or CNDH2, C-term 304 593 IPR031737 -
Psa1g3549 681 MobiDBLite consensus disorder prediction 293 314 - -
Psa1g3549 681 MobiDBLite consensus disorder prediction 226 251 - -
Psa1g3549 681 MobiDBLite consensus disorder prediction 609 633 - -
Psa1g3549 681 PANTHER CONDENSIN-2 COMPLEX SUBUNIT H2 4 671 IPR031739 GO:0030261
Psa1g3549 681 MobiDBLite consensus disorder prediction 263 282 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3549 K11490 - gmx:100785753 850.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g3549 1 305478628 305484183 Psa1g3549 1 305478628 305484183 ECH