Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04018 ATGGCGATGAATACATCTGACCTCGTAACCCAACTCAACCCGGCTTCTCACCATTTCAACCTCGACTCTCTGCTCCGTTATTGCTCTTCCAACATTTCTGGATTCCCTCTTTCCCCGACTCATTTCAACCTCTCCCAGTTTGGGCATGGACAATCCAATCCAACGTACTTGATGGAAGTGGGTTCTGGGGGCACCATGGTGAAGCGCTATGTTTTGAGGAAGAAGCCTCCCGGGAAATTGCTGGCTTCAGCCCATGCTGTCGACAGAGAGTTTATGGGTGTGGCACCTGAGAGGAGGAGGGCAATTTATCTGGAAACTGCTAAAGCCTTAGCTTCCTTACATTCTGCAAATGTGGACTCCATTGGTCTGGAAAAATATGGGCGACGTAATGATTATTGCAAAAGACAGATTGAGAGATGGGCTAAACAATATATTACCTCAACCAGTGAGGGTAAACCTGCAAGAAGTCCAAAAATGTTTGCCCTGATTGATTGGCTACAGCAGCAAATTCCTCCTGAAGATTCTTCAGGAGCAACAGCAGGTCTGGTTCATGGAGATTTTCGCATTGACAATCTCGTGTTCCATCCCACAGAGGATCGAGTAATTGGCATACTTGACTGGGAACTGTCTACACTTGGTAACCAAATGTGTGATGTCGCATACAGCTGTATGCCTTATATTGCAGATATCGGGCGAGAAAATGTACATGAAGGTATGGAACGTTCTGGATTACCAGAGGGAATTCCTTCACTACCAGAATATTTGGTCAAATACTGCTCTCTGGCAGGTAATGCATCAGGAGGTGAGCGTGCTCGACACACAGAAGCACTTGCTAATGGTCTTATAGATGTTGCTTGGGAATTTATTGAACACAAATCTGTGCTTCCGCAGCATCCTCCCTCAGATGCAAATGCACGAGACTATTCAAAAGAGTTAGTGAATGGGAATGATATGCAAGGTCTCTCAAATCAGGGGAAGTTTGTACCTAGTCAAAAGGTTTTGGTGCTGAGGAACAAATTAATTAAGTTCATGGAAGAACACATATACCCCATGGAAAATGAATTTTATAAACTTGCCCAGTCAGAATCACGATGGACTGTTCACCCAGCTGAGGAAAAGTTAAAAGAGCTAGCAAAGAAAGAAGGATTGTGGAACTTATGGATTCCTCGTGATAGTGCTGCGAGGGCAAAAAATCTTATTTTTGATGGTAGCAATAATGATCTACCTACTGATAAAAATGACTTGTTATTGGGTGCTGGTCTAACAAATCTTGAATATGGATACCTTTGTGAGATCATGGGTCGTTCTGTTTGGGCTCCACAAGTATTACTGCGCTATGGAAATAAAGAACAGCTACGAGAATGGCTCATTCCTTTGCTCGAGGGTAAGATTAGGTCTGGATTTGCAATGACAGAACCACGTGTTGCATCTTCTGATGCAACCAATATTGAGTGTTCTATCAAAAGACAAGGAGATTCATATATTATCAATGGGACAAAATGGTGGACAAGTGGTGCTATGGATCCAAGATGCAGAATTCTTATAGTTATGGGGAAAACTGACATCAATGCAGCAAAGCATAAGCAGCAATCGATGATATTAGTGGATGTCCAGACTCCTGGTGTTCACATAAAGAGGCCATTGCTGGTTTTTGGCTTTGATGATGCACCTCATGGGCATGCAGAAGTAACACTTGAGAATGTCTGTGTGCCAGCAAAAAATATCATACTGGGTGAAGGACGTGGATTTGAGATCGCTCAGGGTAGGCTAGGTCCTGGAAGACTGCACCATTGTATGAGACTGATAGGTGCTGCTGAGCGAGGCATGCATATGATGGTTCAAAGAGCTGTTAGTAGAAGAGTATTTGGGAAATTGATTGCTCAACATGGCTCATTTCTTTCAGATATGGCCCAGTGCCGAATAGAGATAGAGAAGACCAGATTGTTGGTGTTGGAAGCCGCCAACCAACTTGATAGGCATGGGAACAAAAAAGCTCGAGGGATATTAGCAATGGCAAAGGTATCTGCGCCAAACATGGCACTAAAGGTGCTTGACATGGCAATGCAAGTGCATGGAGCAGCTGGTCTATCATCTGACACAGTCCTAGCACATCTGTGGGCAACTGCAAGGACGCTGAGAATTGCAGATGGTCCAGATGAAGTCCACTTGGGTACCATAGCAAAAGAAACTATGGGTGGACTTGATAGTGGCCATGATCAAAGGAAGAGGTTTACCCTTCTGGGTATCTCTTCCATCCTTCTTGTGGGTATGGTGGCTTCCGTGGCCGTTGTTGGCATGACCCGTGGAGGCGAACCCAAAGATCAAGATGGACACTTTCTTCTTGGTAATATCCACATCCATAACTCTCAAAATAACCAAGATGTTCTTTGCCAATCAACAGAATACCAAGAAACTTGCCAAAAGAGCCTTGAAAAAGCATCCAATGGAACCAAGGACATGAAAGAGCTCGTCAAAGCCGCATTCAATGCCACAGCAGAGGAGTTATTGAACCGCATTCATAACTCCACCCTCTACAATGAGTTGGCCAAGGACAACATGACAAGACAGGCCATGGATATCTGCAAGGAAGTGTTGGATTATGCTGTTGATGGGATTCACAAATCTGTTAACACATTGGACAATTTTGAGTTAGACAAATTGGGTGAATATATCTATGACCTCAAGGTTTGGCTCACAGGAACACTCTCTCACCAACAAACATGCTTGGCTGGATTTGAGAACACAACTACAGAGGCTGGTGAGATCATGGCCAAGGTGTTGAACACCACTTTGGAGCTAAGCAGCAATGCTGTGGACATGATCTCTGTGGTCTCTGGCCTATTCAAAGAACTCAACTTGAACACAAATACCAGAAAGCTTCTCTCTGATGAGGAAACACAGCATGTGGATGGTAAATTGAGCTTCCCTTTGTGGGTGAATGAAGGACAAAGGCGTCTTCTTCAGGCTCCTGAAAGCGTGAAGCCAAACGTGGTTGTGGCTCAAGATGGAAGTGGACAATTCAAAACACTCACAGAAGCTCTTAAGTCTGTTCCAGCCAACAATGCAAAGCCTTTTGTGATTTACGTTAAGGCTGGTGTGTACAATGAGATTGTCAATGTGGCCAAGGAAATGACACATGTCACAATCATTGGAGATGGTCCCACAAAGACCAAATTCACCGGCAGCCAAAATTACGTAGATGGTATCCAAACATACAACACAGCAACCTTCGGTAAGTGGCACAAATATTCAAACAGGTTATGTGCATAA 3270 0.4416 MAMNTSDLVTQLNPASHHFNLDSLLRYCSSNISGFPLSPTHFNLSQFGHGQSNPTYLMEVGSGGTMVKRYVLRKKPPGKLLASAHAVDREFMGVAPERRRAIYLETAKALASLHSANVDSIGLEKYGRRNDYCKRQIERWAKQYITSTSEGKPARSPKMFALIDWLQQQIPPEDSSGATAGLVHGDFRIDNLVFHPTEDRVIGILDWELSTLGNQMCDVAYSCMPYIADIGRENVHEGMERSGLPEGIPSLPEYLVKYCSLAGNASGGERARHTEALANGLIDVAWEFIEHKSVLPQHPPSDANARDYSKELVNGNDMQGLSNQGKFVPSQKVLVLRNKLIKFMEEHIYPMENEFYKLAQSESRWTVHPAEEKLKELAKKEGLWNLWIPRDSAARAKNLIFDGSNNDLPTDKNDLLLGAGLTNLEYGYLCEIMGRSVWAPQVLLRYGNKEQLREWLIPLLEGKIRSGFAMTEPRVASSDATNIECSIKRQGDSYIINGTKWWTSGAMDPRCRILIVMGKTDINAAKHKQQSMILVDVQTPGVHIKRPLLVFGFDDAPHGHAEVTLENVCVPAKNIILGEGRGFEIAQGRLGPGRLHHCMRLIGAAERGMHMMVQRAVSRRVFGKLIAQHGSFLSDMAQCRIEIEKTRLLVLEAANQLDRHGNKKARGILAMAKVSAPNMALKVLDMAMQVHGAAGLSSDTVLAHLWATARTLRIADGPDEVHLGTIAKETMGGLDSGHDQRKRFTLLGISSILLVGMVASVAVVGMTRGGEPKDQDGHFLLGNIHIHNSQNNQDVLCQSTEYQETCQKSLEKASNGTKDMKELVKAAFNATAEELLNRIHNSTLYNELAKDNMTRQAMDICKEVLDYAVDGIHKSVNTLDNFELDKLGEYIYDLKVWLTGTLSHQQTCLAGFENTTTEAGEIMAKVLNTTLELSSNAVDMISVVSGLFKELNLNTNTRKLLSDEETQHVDGKLSFPLWVNEGQRRLLQAPESVKPNVVVAQDGSGQFKTLTEALKSVPANNAKPFVIYVKAGVYNEIVNVAKEMTHVTIIGDGPTKTKFTGSQNYVDGIQTYNTATFGKWHKYSNRLCA. 1090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04018 1089 ProSitePatterns Pectinesterase signature 1. 1021 1040 IPR018040 -
Seca6g04018 1089 Pfam Plant invertase/pectin methylesterase inhibitor 796 939 IPR006501 GO:0004857
Seca6g04018 1089 Pfam Acyl-CoA dehydrogenase, C-terminal domain 580 729 IPR009075 GO:0016627
Seca6g04018 1089 FunFam Pectinesterase 789 945 - -
Seca6g04018 1089 SUPERFAMILY Pectin lyase-like 993 1079 IPR011050 -
Seca6g04018 1089 CDD ACAD10_11_N-like 43 262 IPR041726 -
Seca6g04018 1089 NCBIfam pectinesterase inhibitor domain 796 942 IPR006501 GO:0004857
Seca6g04018 1089 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 796 944 IPR035513 -
Seca6g04018 1089 Gene3D - 990 1084 IPR012334 -
Seca6g04018 1089 SUPERFAMILY Acyl-CoA dehydrogenase C-terminal domain-like 578 733 IPR036250 GO:0016627
Seca6g04018 1089 Pfam Phosphotransferase enzyme family 96 241 IPR002575 -
Seca6g04018 1089 FunFam Acyl-CoA dehydrogenase fadE12 466 584 - -
Seca6g04018 1089 PANTHER MEDIUM-CHAIN SPECIFIC ACYL-COA DEHYDROGENASE, MITOCHONDRIAL-RELATED 82 731 - -
Seca6g04018 1089 CDD PMEI-like_3 796 946 - -
Seca6g04018 1089 Gene3D - 581 733 - -
Seca6g04018 1089 Pfam Pectinesterase 996 1078 IPR000070 GO:0030599|GO:0042545
Seca6g04018 1089 Gene3D - 85 293 - -
Seca6g04018 1089 Gene3D - 466 580 IPR046373 GO:0016627
Seca6g04018 1089 Gene3D - 329 464 IPR037069 GO:0016627|GO:0050660
Seca6g04018 1089 Gene3D Invertase/pectin methylesterase inhibitor family protein 794 946 IPR035513 -
Seca6g04018 1089 SUPERFAMILY Protein kinase-like (PK-like) 40 233 IPR011009 -
Seca6g04018 1089 SMART PMEI_2 788 940 IPR006501 GO:0004857
Seca6g04018 1089 Pfam Acyl-CoA dehydrogenase, middle domain 467 567 IPR006091 GO:0016627
Seca6g04018 1089 SUPERFAMILY Acyl-CoA dehydrogenase NM domain-like 327 593 IPR009100 GO:0016627
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04018 Seca-Chr6 107829980 107846351 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04018 1 728 Acyl Lipid Metabolism Gene Families AT3G06810 65.296 0.0 1074
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04018 K00249 - gmx:100778771 1265.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04018 6 107829980 107846351 Seca6g04018 6 107829980 107846351 ECH