Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1305 ATGACTAAGGGTACCTCGGAACCGGGGGGGAGTGGAGGCGGTGGCGGTGGCTTCCACGCGGTTCACGCGGAGCGTGACCTAGAGTCCAACTGGGAAGTTGACCTCGCCAAGAAGCTTGAGGAGTATCTGCTGAAAATTTGCTCCGGCGAGATCACCGGCGAACAAGAAGGACATATTCCTGTGAATTTCGCCGAAGGTTTGCCTGCTCTGCTGCTTCAGGGTTCCATTCAGGTGTATAGTCGAAAGGTGGAGTATCTCTACACATTGGTCTTGCGTGCTTTGGAGTTCCTTTCTCAGAAAAGACAGCAGGATCATATAGATGGGGCATCAGTTCAACCTGAAGAAAGTGGTCCCTCTGCTGTTGCCGATGAAGAAACTGATCAATTCTGGTGCTTAGATGACATCCCAGTTGAAGAAAAGAATTCCTTGGATGATACAACAGGCAAAGAAGTGAATTTGGATCACTTTATAAAACCTCCTGCAAATCTAGTTGTTCTTGAAGGTGACTGCTTGGATGCTGTTGGTGATGGAGGGGAATTGGAGTCTTTTCTGTTGTCCACCACAGACCTGTACCAGGACTTCATTTTATTGGACACATCTGATGCTGTTGCAGTTTGTGAATTTCTGAAGGGAAGCAAAGCTGCCACAACTCAAAATGATGCTAATAGAGGAACCTCAACTCGTAAAAGCTTTCTTTCTCCAGGATGTACTGGTGGAAGTGCTCGTAGATTATCAGCTGCTAAGAGTCAGTGTGCTAATTCCAACTGCTCCCCTAAACTTAATAGTAGTTTTGATGACAAAAATGTTCGGCCCAGTTCTCCTGCTTCTGCTGGTCTTGATGACTGCAACTACGGATTTAATATGGATAATGGATGTGATGCATCTAGGGATTCAGACAATTcagatgatgataatgatgatccATGGAAACCTCTGAATCCTCACGAACCAGGCAACTTGAGGGTGAAGCCATTCAGAAAAGtgaaaactataaaaaaaaataactccaATGTGAGACAACCAGTTACTATGAGCACCTTGTTTCCACTTGCAAAATTGCATGGTCCTATCAGTCCAGAGCTCATGGAAATGTGGGAGATGCGACATCATGTCCATGAACGACAAAGGGATTCTCAACCTCCATTATATGAGAAGCTGAGGCAATCTCTTATTAATGAGGGGAATGAAACTGGTGGAACATTTTTTAACTCTGAAGCTGACAATGATGACAATGAATATAATAGTGGAAATCCTGATTTTGATATGCCAGACAATGCTTACATGGAGGAAGATCTACCTCCTAGCAGTAAAGAGGATGAATTTGATGACGCTCATGTCAAGACTGATGAAGCTGTAGATCTTTCTCAGGCTAGTTTGGAAGATCTTTGCCGCTCTCACCTGAATGCTCTCCTAGCAAGCATTGCTGAAAATGAGAAGCAAACTGAAATGGCTGCTAGGGTTTCAACGTGGAAACAAAGAATTGAGCACAACTTGGAAGAACAGGAATCACATCCATCATTTGATATTCAAGACTATGGTGAGAGAATTCTTGACAAGTTCTCCCTGCTCGCCCTTGAAGCAAGCAGTGGCGGTGTCCTATCCTTTTCTGATTTGGTCAGGGGTCAAGAAAAGTATGATGTGGCCCGAAGTTTTTCTTCCCTTCTTCAACTGGTAAACAATGGAGAAGTAGCTCTAGAAAGAAATGGAGTTGATGGGGAGTCTGTCTGCTTCACATCTGTTAATCCCTTTCATGTTAGGCTCCTTAAGCATGGTAAGGAACAGGAGGATGTGCAGCTTCGTTTGCCAAAAAAGAGAGCAAAGTCTCCAACAAAAAAACCCTCAAAAGGTGACAAGAACAAAACTGAAAGAGAAAAGTCTCCCTCATCTTCTAGGAAATATGGATCAACCAGCTTGTCACCACCAGCAAATTGCAAGTTTTCTGTAAAGCTTGGAAAGGTGAGTGCCATAAAATTCTCTCCTGAATCCAAACGAAGGCGGAGATCTCAGTATGTTGAAGCAGTTAACTTACATTCAGCAGGGTGA 2043 0.4312 MTKGTSEPGGSGGGGGGFHAVHAERDLESNWEVDLAKKLEEYLLKICSGEITGEQEGHIPVNFAEGLPALLLQGSIQVYSRKVEYLYTLVLRALEFLSQKRQQDHIDGASVQPEESGPSAVADEETDQFWCLDDIPVEEKNSLDDTTGKEVNLDHFIKPPANLVVLEGDCLDAVGDGGELESFLLSTTDLYQDFILLDTSDAVAVCEFLKGSKAATTQNDANRGTSTRKSFLSPGCTGGSARRLSAAKSQCANSNCSPKLNSSFDDKNVRPSSPASAGLDDCNYGFNMDNGCDASRDSDNSDDDNDDPWKPLNPHEPGNLRVKPFRKVKTIKKNNSNVRQPVTMSTLFPLAKLHGPISPELMEMWEMRHHVHERQRDSQPPLYEKLRQSLINEGNETGGTFFNSEADNDDNEYNSGNPDFDMPDNAYMEEDLPPSSKEDEFDDAHVKTDEAVDLSQASLEDLCRSHLNALLASIAENEKQTEMAARVSTWKQRIEHNLEEQESHPSFDIQDYGERILDKFSLLALEASSGGVLSFSDLVRGQEKYDVARSFSSLLQLVNNGEVALERNGVDGESVCFTSVNPFHVRLLKHGKEQEDVQLRLPKKRAKSPTKKPSKGDKNKTEREKSPSSSRKYGSTSLSPPANCKFSVKLGKVSAIKFSPESKRRRRSQYVEAVNLHSAG 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1305 680 MobiDBLite consensus disorder prediction 594 644 - -
Ssu1g1305 680 MobiDBLite consensus disorder prediction 394 415 - -
Ssu1g1305 680 Pfam Condensin II complex subunit CAP-H2 or CNDH2, N-terminal 19 135 IPR009378 -
Ssu1g1305 680 PANTHER CONDENSIN-2 COMPLEX SUBUNIT H2 6 668 IPR031739 GO:0030261
Ssu1g1305 680 MobiDBLite consensus disorder prediction 659 680 - -
Ssu1g1305 680 MobiDBLite consensus disorder prediction 254 270 - -
Ssu1g1305 680 MobiDBLite consensus disorder prediction 293 323 - -
Ssu1g1305 680 Pfam Condensin II complex subunit CAP-H2 or CNDH2, C-term 308 597 IPR031737 -
Ssu1g1305 680 MobiDBLite consensus disorder prediction 394 440 - -
Ssu1g1305 680 Pfam Condensin II complex subunit CAP-H2 or CNDH2, mid domain 158 304 IPR031719 -
Ssu1g1305 680 MobiDBLite consensus disorder prediction 295 311 - -
Ssu1g1305 680 MobiDBLite consensus disorder prediction 612 629 - -
Ssu1g1305 680 MobiDBLite consensus disorder prediction 254 276 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1305 K11490 - gmx:100786571 1124.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1305 1 28886026 28891662 Ssu1g1305 1 28886026 28891662 ECH