Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu1g0851 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g0852 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa6g02803 . . . . . . . . . . . . . . . . . . . . . Tpr1g1657 . . . . . . . .
Pvu1g0853 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa6g02820 . . . . . . . . . . . . . . . . . . . . . Tpr1g1629 . . . . . . . .
Pvu1g0854 . . . . . Ahy16g2336 Ahy6g2009 Aip06g02625 . Amo16g3055 Amo06g2433 Apr4g1528 Arst6g02874 . . . . Cca07g00729 . Dod01g1882 . . . Gma16g00423 . Gso16g0388 . . . . . . Lapu1g00490 . . . . . Lja1g1662 Mal3g0931 Mepo3g02724 . . Mtr7g2520 Phac1g01121 Phco2g00908 . Psa3g2138 Pste5g00980 Pumo5g02099 Rops8g02409 Seca10g05029 Spst1g00238 Ssu4g1833 . . Trre13g03127 . . . . . . .
Pvu1g0855 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Vivi6g03172 .
Pvu1g0856 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g0857 Acco02g0816 Accr2g02899 Adu06g02219 Aed9g1079 . Ahy16g2339 . Aip06g02632 Alju01g0816 . Amo06g2429 Apr4g1529 Arst6g02877 Bach8g01382 . Bva04g01917 Car03g01804 Cca07g00731 . Dod01g1881 . Glsi12g2121 . . Gso19g0902 . . . . . . . Lapu1g00491 Lasa3g02300 Lele05g0643 Lele06g0467 Lele07g0676 . Lja1g1663 Mal3g3094 . Mesa25g01730 Mibi02g0727 Mtr7g2288 . Phco2g00911 Prci1g3656 . Pste5g00979 Pumo5g02100 . Seca2g03401 Spst1g00239 Ssu4g1834 Sto8g1615 Tpr6g1065 Trre13g02825 Tsu07g02897 Vian2g01450 Vifa5g01902 Vimu6g03706 . Vivi6g03317 .
Pvu1g0858 . . Adu06g02221 Aed9g1081 . Ahy16g2342 Ahy6g2010 Aip06g02633 . Amo16g3061 Amo06g2447 Apr4g1530 Arst6g02879 . . Bva04g01916 Car03g01803 Cca07g00733 . Dod01g1880 . . . Gma16g00425 Gso19g0900 Gso16g0389 Lal8g1105 . Lal10g0234 . . . . . . . . . Lja1g1666 Mal3g3093 . Mesa25g01731 . Mtr7g2287 . . Prci1g3658 Psa3g2143 . . . . . Ssu4g1835 Sto8g1616 Tpr6g1062 . Tsu07g02895 . . . . . .
Pvu1g0859 Acco02g0812 Accr2g02902 Adu06g02222 Aed9g1083 . Ahy16g2343 Ahy6g2011 Aip06g02635 Alju01g0814 Amo16g3062 Amo06g2448 Apr4g1531 Arst6g02881 . Bisa03g3460 . Car03g01802 Cca07g00735 Dere01g2070 Dod01g1879 Enph2g0629 Glsi12g2120 . Gma16g00426 Gso19g0899 Gso17g1661 . . . . . . Lapu1g00494 Lasa3g02298 Lele05g0641 Lele06g0463 Lele07g0674 Lele08g0476 Lja1g1667 Mal3g3092 Mepo3g02454 Mesa25g01732 Mibi02g0724 Mtr7g2286 Phac1g01127 Phco2g00914 Prci1g3661 Psa3g2144 Pste5g00967 Pumo5g02103 . Seca10g05028 Spst1g00241 Ssu4g1836 Sto8g1617 Tpr6g1061 Trre13g02829 Tsu07g02894 . . . . Vivi6g03313 .
Pvu1g0860 . . Adu06g02223 Aed9g1084 . Ahy16g2344 Ahy6g2012 Aip06g02637 . . . Apr4g1532 Arst6g02883 . . Bva04g01915 Car03g01800 Cca07g00737 . Dod01g1878 . . . Gma16g00427 . Gso16g0391 . . . . . . . . . . . . Lja1g1669 Mal3g3090 . . . Mtr7g2285 . . . Psa3g2157 . Pumo5g02104 . . . Ssu4g1837 . Tpr6g1055 . Tsu07g02891 . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Pvu Pvu1g0851 Chr1 13847074 13847512 -
Pvu Pvu1g0852 Chr1 13847702 13851387 -
Lasa Lasa6g02803 Chr6 521680484 521683734 -
Tpr Tpr1g1657 Chr1 15750887 15755544 +
Pvu Pvu1g0853 Chr1 13956513 13959750 -
Lasa Lasa6g02820 Chr6 523930589 523934099 -
Tpr Tpr1g1629 Chr1 15396287 15399649 +
Pvu Pvu1g0854 Chr1 14466374 14469621 +
Ahy Ahy16g2336 Chr16 128960075 128964930 +
Ahy Ahy6g2009 Chr6 98381786 98387047 +
Aip Aip06g02625 Chr06 115475085 115479703 +
Amo Amo16g3055 Chr16 132663525 132668483 +
Amo Amo06g2433 Chr06 85785760 85790954 -
Apr Apr4g1528 Chr4 16481322 16485846 +
Arst Arst6g02874 Chr6 92051348 92056533 +
Cca Cca07g00729 Chr07 11230721 11237330 +
Dod Dod01g1882 Chr01 53644124 53648783 -
Gma Gma16g00423 Chr16 4516829 4520933 +
Gso Gso16g0388 Chr16 4407180 4414012 +
Lapu Lapu1g00490 Chr1 16201209 16209624 +
Lja Lja1g1662 Chr1 18251645 18256007 +
Mal Mal3g0931 Chr3 37500734 37502521 -
Mepo Mepo3g02724 Chr3 37130932 37133941 +
Mtr Mtr7g2520 Chr7 41726020 41729007 +
Phac Phac1g01121 Chr1 10935573 10939096 +
Phco Phco2g00908 Chr2 11156402 11159907 +
Psa Psa3g2138 Chr3 187952272 187956626 -
Pste Pste5g00980 Chr5 6421184 6424272 -
Pumo Pumo5g02099 Chr5 57426983 57430208 +
Rops Rops8g02409 Chr8 55747239 55752342 -
Seca Seca10g05029 Chr10 115806115 115807816 +
Spst Spst1g00238 Chr1 3296903 3300637 +
Ssu Ssu4g1833 Chr4 33405155 33407165 +
Trre Trre13g03127 Chr13 37508000 37510162 +
Pvu Pvu1g0855 Chr1 14517806 14521627 +
Vivi Vivi6g03172 Chr6 121247824 121253315 -
Pvu Pvu1g0856 Chr1 14522916 14525242 -
Pvu Pvu1g0857 Chr1 14547185 14549317 +
Acco Acco02g0816 Chr02 5749905 5752598 -
Accr Accr2g02899 Chr2 64874387 64875649 +
Adu Adu06g02219 Chr06 92891703 92896216 +
Aed Aed9g1079 Chr9 7953301 7955394 +
Ahy Ahy16g2339 Chr16 129029017 129033159 +
Aip Aip06g02632 Chr06 115552770 115556512 +
Alju Alju01g0816 Chr01 6052919 6054631 -
Amo Amo06g2429 Chr06 85730570 85735285 -
Apr Apr4g1529 Chr4 16523083 16524921 +
Arst Arst6g02877 Chr6 92106762 92111306 +
Bach Bach8g01382 Chr8 9471305 9472574 +
Bva Bva04g01917 Chr04 19480405 19482299 -
Car Car03g01804 Chr03 64067522 64069937 -
Cca Cca07g00731 Chr07 11267053 11268976 +
Dod Dod01g1881 Chr01 53623542 53627018 -
Glsi Glsi12g2121 Chr12 36215029 36216295 -
Gso Gso19g0902 Chr19 35477973 35480880 -
Lapu Lapu1g00491 Chr1 16245675 16247980 +
Lasa Lasa3g02300 Chr3 542952876 542954145 -
Lele Lele05g0643 Chr05 3793173 3794715 -
Lele Lele06g0467 Chr06 2850035 2851305 -
Lele Lele07g0676 Chr07 3848702 3850137 -
Lja Lja1g1663 Chr1 18265980 18268021 +
Mal Mal3g3094 Chr3 106001176 106002947 -
Mesa Mesa25g01730 Chr25 20898315 20900075 +
Mibi Mibi02g0727 Chr02 7003564 7005542 -
Mtr Mtr7g2288 Chr7 39293490 39295632 -
Phco Phco2g00911 Chr2 11251487 11253524 +
Prci Prci1g3656 Chr1 53206225 53207847 +
Pste Pste5g00979 Chr5 6402128 6403715 -
Pumo Pumo5g02100 Chr5 57454169 57456286 +
Seca Seca2g03401 Chr2 104977095 104979659 +
Spst Spst1g00239 Chr1 3308925 3310658 +
Ssu Ssu4g1834 Chr4 33442050 33443685 +
Sto Sto8g1615 Chr8 10378472 10379710 +
Tpr Tpr6g1065 Chr6 10037364 10039546 -
Trre Trre13g02825 Chr13 27410045 27411835 +
Tsu Tsu07g02897 Chr07 34230621 34232646 -
Vian Vian2g01450 Chr2 30234406 30236120 -
Vifa Vifa5g01902 Chr5 550390274 550391559 -
Vimu Vimu6g03706 Chr6 35115403 35116688 +
Vivi Vivi6g03317 Chr6 124226758 124228408 -
Pvu Pvu1g0858 Chr1 14604051 14608321 +
Adu Adu06g02221 Chr06 92963982 92969631 +
Aed Aed9g1081 Chr9 7971500 7975077 +
Ahy Ahy16g2342 Chr16 129170319 129175310 +
Ahy Ahy6g2010 Chr6 98511660 98516665 +
Aip Aip06g02633 Chr06 115677878 115682238 +
Amo Amo16g3061 Chr16 132804050 132807395 +
Amo Amo06g2447 Chr06 86314391 86319357 +
Apr Apr4g1530 Chr4 16552743 16556915 +
Arst Arst6g02879 Chr6 92180066 92185047 +
Bva Bva04g01916 Chr04 19473295 19477661 -
Car Car03g01803 Chr03 64044610 64048656 -
Cca Cca07g00733 Chr07 11285429 11288325 +
Dod Dod01g1880 Chr01 53608972 53615460 -
Gma Gma16g00425 Chr16 4525683 4529962 +
Gso Gso19g0900 Chr19 35414687 35419327 -
Gso Gso16g0389 Chr16 4417875 4422465 +
Lal Lal8g1105 Chr8 9207814 9211899 +
Lal Lal10g0234 Chr10 3358989 3363186 +
Lja Lja1g1666 Chr1 18349627 18358982 +
Mal Mal3g3093 Chr3 105965204 105967636 -
Mesa Mesa25g01731 Chr25 20916829 20918217 +
Mtr Mtr7g2287 Chr7 39271465 39275155 -
Prci Prci1g3658 Chr1 53221225 53225366 +
Psa Psa3g2143 Chr3 189007820 189011853 +
Ssu Ssu4g1835 Chr4 33455231 33457988 +
Sto Sto8g1616 Chr8 10386778 10389560 +
Tpr Tpr6g1062 Chr6 10000955 10005184 -
Tsu Tsu07g02895 Chr07 34196136 34200202 -
Pvu Pvu1g0859 Chr1 14754096 14756087 +
Acco Acco02g0812 Chr02 5736332 5737653 -
Accr Accr2g02902 Chr2 64890975 64892288 +
Adu Adu06g02222 Chr06 92974349 92976256 +
Aed Aed9g1083 Chr9 7977594 7981328 +
Ahy Ahy16g2343 Chr16 129180225 129182036 +
Ahy Ahy6g2011 Chr6 98520876 98523435 +
Aip Aip06g02635 Chr06 115687234 115688732 +
Alju Alju01g0814 Chr01 6024903 6026222 -
Amo Amo16g3062 Chr16 132812323 132814023 +
Amo Amo06g2448 Chr06 86323646 86325299 +
Apr Apr4g1531 Chr4 16556964 16562151 +
Arst Arst6g02881 Chr6 92189881 92190798 +
Bisa Bisa03g3460 Chr03 68328530 68329492 +
Car Car03g01802 Chr03 64025672 64027200 -
Cca Cca07g00735 Chr07 11296649 11297862 +
Dere Dere01g2070 Chr01 34711888 34713220 -
Dod Dod01g1879 Chr01 53591581 53593209 -
Enph Enph2g0629 Chr2 4882039 4884074 -
Glsi Glsi12g2120 Chr12 36196903 36202879 -
Gma Gma16g00426 Chr16 4533937 4538211 +
Gso Gso19g0899 Chr19 35398493 35400666 -
Gso Gso17g1661 Chr17 30625496 30629250 -
Lapu Lapu1g00494 Chr1 16286873 16288065 +
Lasa Lasa3g02298 Chr3 542830205 542831429 -
Lele Lele05g0641 Chr05 3777143 3780799 -
Lele Lele06g0463 Chr06 2839399 2841468 -
Lele Lele07g0674 Chr07 3836794 3838129 -
Lele Lele08g0476 Chr08 2907607 2909677 -
Lja Lja1g1667 Chr1 18365108 18366718 +
Mal Mal3g3092 Chr3 105960370 105961607 -
Mepo Mepo3g02454 Chr3 34548724 34550265 -
Mesa Mesa25g01732 Chr25 20921580 20922848 +
Mibi Mibi02g0724 Chr02 6960347 6961575 -
Mtr Mtr7g2286 Chr7 39267475 39269903 -
Phac Phac1g01127 Chr1 11101136 11105931 +
Phco Phco2g00914 Chr2 11310469 11311661 +
Prci Prci1g3661 Chr1 53227200 53229008 +
Psa Psa3g2144 Chr3 189022133 189025266 +
Pste Pste5g00967 Chr5 6353410 6355122 -
Pumo Pumo5g02103 Chr5 57491463 57493439 +
Seca Seca10g05028 Chr10 115787236 115792883 -
Spst Spst1g00241 Chr1 3324238 3325436 +
Ssu Ssu4g1836 Chr4 33460396 33461585 +
Sto Sto8g1617 Chr8 10390507 10391888 +
Tpr Tpr6g1061 Chr6 9993467 9995199 -
Trre Trre13g02829 Chr13 27484508 27485735 +
Tsu Tsu07g02894 Chr07 34189234 34190762 -
Vivi Vivi6g03313 Chr6 124109302 124112415 -
Pvu Pvu1g0860 Chr1 14824969 14828350 +
Adu Adu06g02223 Chr06 93040692 93045116 +
Aed Aed9g1084 Chr9 7994228 7999288 +
Ahy Ahy16g2344 Chr16 129264809 129269511 +
Ahy Ahy6g2012 Chr6 98626173 98630944 +
Aip Aip06g02637 Chr06 115762706 115767074 +
Apr Apr4g1532 Chr4 16592688 16597054 +
Arst Arst6g02883 Chr6 92255514 92260189 +
Bva Bva04g01915 Chr04 19466123 19470348 -
Car Car03g01800 Chr03 63982106 63986729 -
Cca Cca07g00737 Chr07 11351484 11356274 +
Dod Dod01g1878 Chr01 53548450 53552996 -
Gma Gma16g00427 Chr16 4554120 4557939 +
Gso Gso16g0391 Chr16 4445518 4450210 +
Lja Lja1g1669 Chr1 18432727 18437500 +
Mal Mal3g3090 Chr3 105934094 105937297 -
Mtr Mtr7g2285 Chr7 39248176 39253595 -
Psa Psa3g2157 Chr3 190021881 190026009 +
Pumo Pumo5g02104 Chr5 57519372 57523582 +
Ssu Ssu4g1837 Chr4 33489067 33492234 +
Tpr Tpr6g1055 Chr6 9946329 9951119 -
Tsu Tsu07g02891 Chr07 34131429 34136002 -
Gso Gso19g0899 Chr19 35398493 35400666 -
Vian Vian2g01450 Chr2 30234406 30236120 -