Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2429 ATGGTGAGTGTGGAAGAGATCCGCAACGCTGCGCGTGCGAATGGGCCAGCAACGGTGTTGGCCATTGGCACCGCCACACCTTCCAACTGTGTGTACCAAGACACGTACCCTGACTACTATTTTCGAATCACCAATAGCGAGCACATGACTGATCTTAAAGAAAAGTTCAAGCGAATGTGTGAGAAGTCCATGATCAGGAAGAGGTACATGCACCTAACAGAGGATTTCCTAAAGAAGAATCCCAGCATGTGTGAGTACATGGCGCCATCGTTGGACGCAAGACAGGATATAGTGGTGGTTGAAGTTCCAAAGCTCGGAAAAGAAGCGGCCACCAAAGCCATCAAGGACTGGGGTCAACCCAAATCCAAGATCACCCACCTCGTCTTCTGCACCACCTCCGGCGTCGACATGCCCGGTGCCGACTACCAGCTCACCAAGCTTCTCGGCCTCCGCCCCTCCGTCAAGCGCCTCATGATGTACCAGCAGGGCTGCTTCGCCGGAGGGACGGTCCTTCGACTCGCGAAGGATCTTGCGGAGAACAACAAGAACGCTCGCGTCCTTGTTGTCTGCTCTGAGATCACTGCCGTCACGTTCCGTGGTCCCTCGGACACGCACCTGGATTCCATGGTGGGCCAGGCGTTGTTCGGAGACGGAGCGGCAGCAGTGATCGTAGGAGCCGATCCCGACACCAAAGTGGAACGTCCGTTGTTCGAGATGGTGTCGGCGGCTCAGACGATCTTGCCGGACTCCGAAGGTGCCATCGATGGTCACCTGAGAGAGGTCGGATTAACGTTTCACCTGCTGAAGGATGTTCCGGGGATCATATCAAAGAATATTGAGAAGAGTTTGGTGGAGGCTTTTACTCCCATTGGGATCAGTGATTGGAACTCTATCTTCTGGATAGCGCACCCAGGTGGACCTGCTATATTAGATCAGGTTGAAGCTAAGCTACAACTGAAGGAAGAGAAGCTGAAAGCCACTCGCCACGTGTTGGGAGAGTATGGAAACATGTCAAGTGCATGTGTGCTTTTCATTTTGGATGAGATGAGAAAGAGGTCAATTGAAGAAGGTAAGGCCACCACCGGAGAAGGCTTCGATTGGGGGGTCCTATTCGGGTTCGGACCGGGTCTTACGGTGGAGACGGTGGTGCTTCACAGTCTTCCCTTGGAAAATCGATCTTGA 1182 0.5338 MVSVEEIRNAARANGPATVLAIGTATPSNCVYQDTYPDYYFRITNSEHMTDLKEKFKRMCEKSMIRKRYMHLTEDFLKKNPSMCEYMAPSLDARQDIVVVEVPKLGKEAATKAIKDWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKNARVLVVCSEITAVTFRGPSDTHLDSMVGQALFGDGAAAVIVGADPDTKVERPLFEMVSAAQTILPDSEGAIDGHLREVGLTFHLLKDVPGIISKNIEKSLVEAFTPIGISDWNSIFWIAHPGGPAILDQVEAKLQLKEEKLKATRHVLGEYGNMSSACVLFILDEMRKRSIEEGKATTGEGFDWGVLFGFGPGLTVETVVLHSLPLENRS* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2429 393 Pfam Chalcone and stilbene synthases, N-terminal domain 5 228 IPR001099 -
Amo06g2429 393 Pfam Chalcone and stilbene synthases, C-terminal domain 238 388 IPR012328 -
Amo06g2429 393 SUPERFAMILY Thiolase-like 235 386 IPR016039 GO:0016746
Amo06g2429 393 ProSitePatterns Chalcone and stilbene synthases active site. 156 172 IPR018088 GO:0009058|GO:0016746
Amo06g2429 393 Gene3D - 1 235 IPR016039 GO:0016746
Amo06g2429 393 CDD CHS_like 16 384 - -
Amo06g2429 393 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 2 389 IPR011141 GO:0009058|GO:0016747
Amo06g2429 393 SUPERFAMILY Thiolase-like 1 233 IPR016039 GO:0016746
Amo06g2429 393 PIRSF PKS_III 2 388 IPR011141 GO:0009058|GO:0016747
Amo06g2429 393 Coils Coil 310 330 - -
Amo06g2429 393 PANTHER CHALCONE SYNTHASE 2 2 389 - -
Amo06g2429 393 Gene3D - 236 392 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2429 Amo-Chr6 85730570 85735285 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2429 105 372 Acyl Lipid Metabolism Gene Families AT1G62640 25.253 5.12e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2429 K00660 - gmx:100775264 701.819