Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01450 ATGCCACAAGGTGATTCCAACGGTAGCTCCACGCAGCATGCTGCACTCACTACTAATACTAGGCGTGTGCCTACACCAGGGAAGGCCACCATACTTGCCATAGGCAAGGCTTTCCCTAGCCAAATCATCCCTCAGGAGTGTTTGGTTGAGGGCTATATCCGTGACACTAAGTGCGTAGATGCTTATATTAAGGAGAAATTGGAACGTCTCTGTAAAAACACCACTGTGAAGACAAGGTACACAGTGATGTCAAAGGAGATCCTTGACAAGTATCCAGAGTTGGCGACAGAGGGTTCCCCAACCATAAAGCAGAAGCTTGAAATAGCGAACCCTGCAGTGGTAGAGATGGCTACCAAGGCCAGCCTTTGCTGCATCAAGGAATGGGGAAGGCCTGCTCAAGACATCACCCACATTGTGTATGTTTCCTCGAGTGAAATAAGGCTACCAGGTGGTGACCTTTACTTGGCAAATGAGCTTGGTCTCAGGAGTGACGTTGGCCGTGTAATGCTGTACTTTCTAGGTTGCTATGGTGGTGTCACAGGCCTGAGAGTGGCCAAGGACATTGCAGAGAACAACCCTGGTAGCAGGGTTCTGGTCACTACCTCTGAGACCACCATTCTTGGGTTTAGACCCCCCAACAAGGCCAGGCCTTATGATCTTGTGGGGGCTGCACTTTTTGGTGATGGAGCTGCAGCTGTCATAGTTGGAGCCAACCCTGTGGTGGGTCAAGAGTCTCCCTTCATGGAATTGAGCTATGCAGTCCAAAAGTTTCTGCCTGAGACACACAGTGTGATTGATGGGAGACTCTCTGAAGAAGGCATAAACTTCAAACTTGGAAGAGATCTCCCTCAGAAAATTGAAGACAACATAGAAGAGTTCTGCAGAAAGCTGATGGCCAAAAGCAGTGTGAAGGAGTTCAATGATTTGTTCTGGGCAGTTCACCCTGGAGGGCCTGCAATTCTGAACAAGCTTGAGAGTACCCTGAAGTTGAGCAGTGACAAGTTAGAGTGCAGTAGGAAGGCACTGATGGACTATGGCAATGTTAGCAGCAACACTATATTCTATGTGATGGAGTACATGAGGGAGTTTCTGAAAGATGGTGCTGAAGAATGGGGCTTGGGACTGGCATTTGGTCCAGGAATTACTTTTGAAGGCATTCTCCTGCGCAGCCTCTAA 1176 0.4864 MPQGDSNGSSTQHAALTTNTRRVPTPGKATILAIGKAFPSQIIPQECLVEGYIRDTKCVDAYIKEKLERLCKNTTVKTRYTVMSKEILDKYPELATEGSPTIKQKLEIANPAVVEMATKASLCCIKEWGRPAQDITHIVYVSSSEIRLPGGDLYLANELGLRSDVGRVMLYFLGCYGGVTGLRVAKDIAENNPGSRVLVTTSETTILGFRPPNKARPYDLVGAALFGDGAAAVIVGANPVVGQESPFMELSYAVQKFLPETHSVIDGRLSEEGINFKLGRDLPQKIEDNIEEFCRKLMAKSSVKEFNDLFWAVHPGGPAILNKLESTLKLSSDKLECSRKALMDYGNVSSNTIFYVMEYMREFLKDGAEEWGLGLAFGPGITFEGILLRSL 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01450 391 Pfam Chalcone and stilbene synthases, N-terminal domain 20 239 IPR001099 -
Vian2g01450 391 MobiDBLite consensus disorder prediction 1 22 - -
Vian2g01450 391 FunFam Chalcone synthase 2 12 246 - -
Vian2g01450 391 FunFam Chalcone synthase 1 247 391 - -
Vian2g01450 391 PIRSF PKS_III 14 391 IPR011141 GO:0009058|GO:0016747
Vian2g01450 391 SUPERFAMILY Thiolase-like 226 390 IPR016039 GO:0016746
Vian2g01450 391 SUPERFAMILY Thiolase-like 26 240 IPR016039 GO:0016746
Vian2g01450 391 CDD CHS_like 29 388 - -
Vian2g01450 391 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 20 391 IPR011141 GO:0009058|GO:0016747
Vian2g01450 391 Pfam Chalcone and stilbene synthases, C-terminal domain 249 391 IPR012328 -
Vian2g01450 391 Gene3D - 248 390 IPR016039 GO:0016746
Vian2g01450 391 Gene3D - 4 246 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01450 Vian-Chr2 30234406 30236120 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01450 155 381 Acyl Lipid Metabolism Gene Families AT1G71160 23.462 1.12e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01450 - - gmx:100793478 736.873
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g01450 2 30234406 30236120 Vian2g01450 2 30234406 30236120 ECH